Analysis of interatomic Contacts of Structural Units in PDB entry:
6JFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JFU entry

There are 4 chains in PDB entry 6JFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7ARG 1082
B
 G 1 U 132
C
 T 1 C 35
D
 A 1 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6JFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 89Right-handed alpha
Helix 2
AA2
A
93 97Right-handed 310
Helix 3
AA3
A
109 117Right-handed alpha
Helix 4
AA4
A
123 137Right-handed alpha
Helix 5
AA5
A
156 171Right-handed alpha
Helix 6
AA6
A
176 186Right-handed alpha
Helix 7
AA7
A
204 222Right-handed alpha
Helix 8
AA8
A
228 241Right-handed alpha
Helix 9
AA9
A
247 255Right-handed 310
Helix 10
AB1
A
271 285Right-handed alpha
Helix 11
AB2
A
298 307Right-handed alpha
Helix 12
AB3
A
307 312Right-handed alpha
Helix 13
AB4
A
316 324Right-handed alpha
Helix 14
AB5
A
350 363Right-handed alpha
Helix 15
AB6
A
375 389Right-handed alpha
Helix 16
AB7
A
391 400Right-handed alpha
Helix 17
AB8
A
404 415Right-handed alpha
Helix 18
AB9
A
425 438Right-handed alpha
Helix 19
AC1
A
440 450Right-handed alpha
Helix 20
AC2
A
474 496Right-handed alpha
Helix 21
AC3
A
512 520Right-handed alpha
Helix 22
AC4
A
676 685Right-handed alpha
Helix 23
AC5
A
699 704Right-handed alpha
Helix 24
AC6
A
721 731Right-handed alpha
Helix 25
AC7
A
735 747Right-handed alpha
Helix 26
AC8
A
781 789Right-handed alpha
Helix 27
AC9
A
802 812Right-handed alpha
Helix 28
AD1
A
849 855Right-handed alpha
Helix 29
AD2
A
870 876Right-handed alpha
Helix 30
AD3
A
877 882Right-handed alpha
Helix 31
AD4
A
885 899Right-handed alpha
Helix 32
AD5
A
902 907Right-handed alpha
Helix 33
AD6
A
975 981Right-handed alpha
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There are 7 sheets in PDB entry 6JFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
21 29anti-parallel
Strand 3
A
35 45anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
420 424anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 848first strand
Strand 2
A
944 946anti-parallel
Strand 3
A
935 937anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
859 865first strand
Strand 2
A
924 930anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
967 974first strand
Strand 2
A
951 959anti-parallel
Strand 3
A
998 1003anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1034 1037anti-parallel
Strand 3
A
1022 1027anti-parallel
Strand 4
A
1008 1011anti-parallel
Strand 5
A
1059 1061anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1069 1071anti-parallel
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