Analysis of interatomic Contacts of Structural Units in PDB entry:
6JFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JFY entry

There are 4 chains in PDB entry 6JFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	HIS 3	VAL 809
A	HIS 3	VAL 809
C	HIS 3	VAL 809
B	HIS 3	VAL 809

There are116 helices in PDB entry 6JFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	15	19	Right-handed 310
Helix 2	AA2	D	23	39	Right-handed alpha
Helix 3	AA3	D	59	74	Right-handed alpha
Helix 4	AA4	D	86	97	Right-handed alpha
Helix 5	AA5	D	124	140	Right-handed alpha
Helix 6	AA6	D	151	162	Right-handed alpha
Helix 7	AA7	D	163	166	Right-handed 310
Helix 8	AA8	D	183	193	Right-handed alpha
Helix 9	AA9	D	203	217	Right-handed alpha
Helix 10	AB1	D	238	243	Right-handed alpha
Helix 11	AB2	D	258	272	Right-handed alpha
Helix 12	AB3	D	289	308	Right-handed alpha
Helix 13	AB4	D	325	337	Right-handed alpha
Helix 14	AB5	D	427	429	Right-handed 310
Helix 15	AB6	D	433	446	Right-handed alpha
Helix 16	AB7	D	470	478	Right-handed alpha
Helix 17	AB8	D	491	496	Right-handed alpha
Helix 18	AB9	D	523	528	Right-handed 310
Helix 19	AC1	D	531	554	Right-handed alpha
Helix 20	AC2	D	602	636	Right-handed alpha
Helix 21	AC3	D	641	648	Right-handed alpha
Helix 22	AC4	D	659	667	Right-handed alpha
Helix 23	AC5	D	670	683	Right-handed alpha
Helix 24	AC6	D	690	701	Right-handed alpha
Helix 25	AC7	D	709	719	Right-handed alpha
Helix 26	AC8	D	744	758	Right-handed alpha
Helix 27	AC9	D	759	769	Right-handed alpha
Helix 28	AD1	D	793	804	Right-handed alpha
Helix 29	AD2	A	15	19	Right-handed 310
Helix 30	AD3	A	23	39	Right-handed alpha
Helix 31	AD4	A	59	74	Right-handed alpha
Helix 32	AD5	A	83	97	Right-handed alpha
Helix 33	AD6	A	124	140	Right-handed alpha
Helix 34	AD7	A	152	157	Right-handed alpha
Helix 35	AD8	A	157	162	Right-handed alpha
Helix 36	AD9	A	163	166	Right-handed 310
Helix 37	AE1	A	183	194	Right-handed alpha
Helix 38	AE2	A	203	217	Right-handed alpha
Helix 39	AE3	A	232	236	Right-handed 310
Helix 40	AE4	A	238	242	Right-handed 310
Helix 41	AE5	A	258	272	Right-handed alpha
Helix 42	AE6	A	289	308	Right-handed alpha
Helix 43	AE7	A	327	338	Right-handed alpha
Helix 44	AE8	A	426	429	Right-handed 310
Helix 45	AE9	A	433	447	Right-handed alpha
Helix 46	AF1	A	470	478	Right-handed alpha
Helix 47	AF2	A	491	496	Right-handed alpha
Helix 48	AF3	A	531	547	Right-handed alpha
Helix 49	AF4	A	547	553	Right-handed alpha
Helix 50	AF5	A	603	634	Right-handed alpha
Helix 51	AF6	A	641	648	Right-handed alpha
Helix 52	AF7	A	659	667	Right-handed alpha
Helix 53	AF8	A	670	683	Right-handed alpha
Helix 54	AF9	A	690	701	Right-handed alpha
Helix 55	AG1	A	708	719	Right-handed alpha
Helix 56	AG2	A	744	759	Right-handed alpha
Helix 57	AG3	A	759	769	Right-handed alpha
Helix 58	AG4	A	790	792	Right-handed 310
Helix 59	AG5	A	793	804	Right-handed alpha
Helix 60	AG6	C	15	19	Right-handed 310
Helix 61	AG7	C	23	38	Right-handed alpha
Helix 62	AG8	C	59	74	Right-handed alpha
Helix 63	AG9	C	83	97	Right-handed alpha
Helix 64	AH1	C	124	140	Right-handed alpha
Helix 65	AH2	C	150	157	Right-handed alpha
Helix 66	AH3	C	157	163	Right-handed alpha
Helix 67	AH4	C	164	166	Right-handed 310
Helix 68	AH5	C	183	194	Right-handed alpha
Helix 69	AH6	C	203	217	Right-handed alpha
Helix 70	AH7	C	231	236	Right-handed 310
Helix 71	AH8	C	258	269	Right-handed alpha
Helix 72	AH9	C	289	308	Right-handed alpha
Helix 73	AI1	C	326	338	Right-handed alpha
Helix 74	AI2	C	433	446	Right-handed alpha
Helix 75	AI3	C	470	479	Right-handed alpha
Helix 76	AI4	C	491	498	Right-handed alpha
Helix 77	AI5	C	533	547	Right-handed alpha
Helix 78	AI6	C	547	552	Right-handed alpha
Helix 79	AI7	C	602	634	Right-handed alpha
Helix 80	AI8	C	659	668	Right-handed alpha
Helix 81	AI9	C	670	683	Right-handed alpha
Helix 82	AJ1	C	690	701	Right-handed alpha
Helix 83	AJ2	C	709	719	Right-handed alpha
Helix 84	AJ3	C	743	758	Right-handed alpha
Helix 85	AJ4	C	759	769	Right-handed alpha
Helix 86	AJ5	C	790	792	Right-handed 310
Helix 87	AJ6	C	793	804	Right-handed alpha
Helix 88	AJ7	C	805	809	Right-handed 310
Helix 89	AJ8	B	15	19	Right-handed 310
Helix 90	AJ9	B	23	39	Right-handed alpha
Helix 91	AK1	B	59	74	Right-handed alpha
Helix 92	AK2	B	83	97	Right-handed alpha
Helix 93	AK3	B	124	140	Right-handed alpha
Helix 94	AK4	B	151	156	Right-handed alpha
Helix 95	AK5	B	157	163	Right-handed alpha
Helix 96	AK6	B	183	193	Right-handed alpha
Helix 97	AK7	B	203	217	Right-handed alpha
Helix 98	AK8	B	231	236	Right-handed 310
Helix 99	AK9	B	258	269	Right-handed alpha
Helix 100	AL1	B	289	309	Right-handed alpha
Helix 101	AL2	B	327	337	Right-handed alpha
Helix 102	AL3	B	426	429	Right-handed 310
Helix 103	AL4	B	433	446	Right-handed alpha
Helix 104	AL5	B	470	478	Right-handed alpha
Helix 105	AL6	B	491	496	Right-handed alpha
Helix 106	AL7	B	531	553	Right-handed alpha
Helix 107	AL8	B	602	636	Right-handed alpha
Helix 108	AL9	B	641	648	Right-handed alpha
Helix 109	AM1	B	659	667	Right-handed alpha
Helix 110	AM2	B	670	683	Right-handed alpha
Helix 111	AM3	B	690	701	Right-handed alpha
Helix 112	AM4	B	709	717	Right-handed alpha
Helix 113	AM5	B	743	758	Right-handed alpha
Helix 114	AM6	B	759	769	Right-handed alpha
Helix 115	AM7	B	789	800	Right-handed alpha
Helix 116	AM8	B	800	806	Right-handed alpha

There are 36 sheets in PDB entry 6JFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	47	49	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	54	56	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	146	148	parallel
Strand 3	D	197	200	parallel
Strand 4	D	225	227	parallel
Strand 5	D	247	249	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	342	first strand
Strand 2	D	345	347	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	367	first strand
Strand 2	D	370	378	anti-parallel
Strand 3	D	382	384	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	409	first strand
Strand 2	D	449	454	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	418	first strand
Strand 2	D	431	432	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	499	first strand
Strand 2	D	738	739	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	687	688	first strand
Strand 2	D	652	656	parallel
Strand 3	D	703	708	parallel
Strand 4	D	509	514	anti-parallel
Strand 5	D	722	725	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	47	49	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	8	13	parallel
Strand 3	A	78	79	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	119	120	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	148	first strand
Strand 2	A	170	175	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	247	252	parallel
Strand 3	A	361	366	anti-parallel
Strand 4	A	371	377	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	346	349	anti-parallel
Strand 3	A	356	358	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	451	454	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	431	432	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	732	734	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	722	724	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	654	first strand
Strand 2	A	703	705	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	48	49	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	53	56	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	118	120	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	143	148	parallel
Strand 3	C	197	200	parallel
Strand 4	C	225	228	parallel
Strand 5	C	247	252	parallel
Strand 6	C	361	367	anti-parallel
Strand 7	C	370	378	anti-parallel
Strand 8	C	382	384	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	500	first strand
Strand 2	C	737	738	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	654	first strand
Strand 2	C	703	708	parallel
Strand 3	C	509	514	anti-parallel
Strand 4	C	722	725	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	47	49	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	53	56	parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	145	148	parallel
Strand 3	B	198	201	parallel
Strand 4	B	225	228	parallel
Strand 5	B	247	252	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	371	375	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	346	350	anti-parallel
Strand 3	B	355	358	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	409	first strand
Strand 2	B	449	454	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	431	432	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	489	first strand
Strand 2	B	732	738	anti-parallel
Strand 3	B	499	500	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	489	first strand
Strand 2	B	732	738	anti-parallel
Strand 3	B	505	507	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	708	first strand
Strand 2	B	509	514	anti-parallel
Strand 3	B	722	725	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	655	656	first strand
Strand 2	B	687	688	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JFY