Analysis of interatomic Contacts of Structural Units in PDB entry:
6JFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JFZ entry

There are 4 chains in PDB entry 6JFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 3	VAL 809
B	HIS 3	VAL 809
D	HIS 3	VAL 809
C	HIS 3	VAL 809

There are117 helices in PDB entry 6JFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	19	Right-handed 310
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	60	74	Right-handed alpha
Helix 4	AA4	A	83	98	Right-handed alpha
Helix 5	AA5	A	124	140	Right-handed alpha
Helix 6	AA6	A	151	156	Right-handed alpha
Helix 7	AA7	A	157	163	Right-handed alpha
Helix 8	AA8	A	164	166	Right-handed 310
Helix 9	AA9	A	183	194	Right-handed alpha
Helix 10	AB1	A	203	217	Right-handed alpha
Helix 11	AB2	A	241	245	Right-handed 310
Helix 12	AB3	A	258	272	Right-handed alpha
Helix 13	AB4	A	289	308	Right-handed alpha
Helix 14	AB5	A	327	336	Right-handed alpha
Helix 15	AB6	A	426	429	Right-handed 310
Helix 16	AB7	A	433	447	Right-handed alpha
Helix 17	AB8	A	470	479	Right-handed alpha
Helix 18	AB9	A	491	498	Right-handed alpha
Helix 19	AC1	A	531	552	Right-handed alpha
Helix 20	AC2	A	603	636	Right-handed alpha
Helix 21	AC3	A	641	648	Right-handed alpha
Helix 22	AC4	A	659	668	Right-handed alpha
Helix 23	AC5	A	670	683	Right-handed alpha
Helix 24	AC6	A	684	687	Right-handed 310
Helix 25	AC7	A	690	701	Right-handed alpha
Helix 26	AC8	A	709	717	Right-handed alpha
Helix 27	AC9	A	744	757	Right-handed alpha
Helix 28	AD1	A	759	770	Right-handed alpha
Helix 29	AD2	A	790	799	Right-handed alpha
Helix 30	AD3	A	805	809	Right-handed 310
Helix 31	AD4	B	15	19	Right-handed 310
Helix 32	AD5	B	23	38	Right-handed alpha
Helix 33	AD6	B	59	72	Right-handed alpha
Helix 34	AD7	B	83	97	Right-handed alpha
Helix 35	AD8	B	124	140	Right-handed alpha
Helix 36	AD9	B	150	156	Right-handed alpha
Helix 37	AE1	B	157	163	Right-handed alpha
Helix 38	AE2	B	164	166	Right-handed 310
Helix 39	AE3	B	183	194	Right-handed alpha
Helix 40	AE4	B	203	217	Right-handed alpha
Helix 41	AE5	B	238	243	Right-handed 310
Helix 42	AE6	B	258	272	Right-handed alpha
Helix 43	AE7	B	290	309	Right-handed alpha
Helix 44	AE8	B	326	336	Right-handed alpha
Helix 45	AE9	B	426	429	Right-handed 310
Helix 46	AF1	B	433	447	Right-handed alpha
Helix 47	AF2	B	470	478	Right-handed alpha
Helix 48	AF3	B	491	498	Right-handed alpha
Helix 49	AF4	B	531	554	Right-handed alpha
Helix 50	AF5	B	602	633	Right-handed alpha
Helix 51	AF6	B	641	647	Right-handed alpha
Helix 52	AF7	B	659	668	Right-handed alpha
Helix 53	AF8	B	670	683	Right-handed alpha
Helix 54	AF9	B	684	687	Right-handed 310
Helix 55	AG1	B	691	701	Right-handed alpha
Helix 56	AG2	B	709	719	Right-handed alpha
Helix 57	AG3	B	744	759	Right-handed alpha
Helix 58	AG4	B	759	770	Right-handed alpha
Helix 59	AG5	B	793	806	Right-handed alpha
Helix 60	AG6	D	15	19	Right-handed 310
Helix 61	AG7	D	23	38	Right-handed alpha
Helix 62	AG8	D	59	74	Right-handed alpha
Helix 63	AG9	D	83	97	Right-handed alpha
Helix 64	AH1	D	124	140	Right-handed alpha
Helix 65	AH2	D	151	167	Right-handed alpha
Helix 66	AH3	D	183	194	Right-handed alpha
Helix 67	AH4	D	203	218	Right-handed alpha
Helix 68	AH5	D	241	245	Right-handed 310
Helix 69	AH6	D	258	272	Right-handed alpha
Helix 70	AH7	D	289	309	Right-handed alpha
Helix 71	AH8	D	327	337	Right-handed alpha
Helix 72	AH9	D	426	429	Right-handed 310
Helix 73	AI1	D	433	446	Right-handed alpha
Helix 74	AI2	D	470	478	Right-handed alpha
Helix 75	AI3	D	491	498	Right-handed alpha
Helix 76	AI4	D	531	554	Right-handed alpha
Helix 77	AI5	D	602	636	Right-handed alpha
Helix 78	AI6	D	641	648	Right-handed alpha
Helix 79	AI7	D	659	668	Right-handed alpha
Helix 80	AI8	D	670	683	Right-handed alpha
Helix 81	AI9	D	690	701	Right-handed alpha
Helix 82	AJ1	D	709	717	Right-handed alpha
Helix 83	AJ2	D	743	758	Right-handed alpha
Helix 84	AJ3	D	759	770	Right-handed alpha
Helix 85	AJ4	D	793	805	Right-handed alpha
Helix 86	AJ5	C	15	19	Right-handed 310
Helix 87	AJ6	C	23	39	Right-handed alpha
Helix 88	AJ7	C	59	74	Right-handed alpha
Helix 89	AJ8	C	83	97	Right-handed alpha
Helix 90	AJ9	C	124	140	Right-handed alpha
Helix 91	AK1	C	150	157	Right-handed alpha
Helix 92	AK2	C	157	163	Right-handed alpha
Helix 93	AK3	C	164	166	Right-handed 310
Helix 94	AK4	C	183	194	Right-handed alpha
Helix 95	AK5	C	203	217	Right-handed alpha
Helix 96	AK6	C	232	236	Right-handed 310
Helix 97	AK7	C	238	243	Right-handed alpha
Helix 98	AK8	C	258	272	Right-handed alpha
Helix 99	AK9	C	289	309	Right-handed alpha
Helix 100	AL1	C	327	338	Right-handed alpha
Helix 101	AL2	C	426	429	Right-handed 310
Helix 102	AL3	C	433	447	Right-handed alpha
Helix 103	AL4	C	470	478	Right-handed alpha
Helix 104	AL5	C	523	528	Right-handed alpha
Helix 105	AL6	C	531	546	Right-handed alpha
Helix 106	AL7	C	547	554	Right-handed alpha
Helix 107	AL8	C	602	636	Right-handed alpha
Helix 108	AL9	C	641	648	Right-handed alpha
Helix 109	AM1	C	659	668	Right-handed alpha
Helix 110	AM2	C	670	683	Right-handed alpha
Helix 111	AM3	C	684	687	Right-handed 310
Helix 112	AM4	C	690	701	Right-handed alpha
Helix 113	AM5	C	709	717	Right-handed alpha
Helix 114	AM6	C	744	758	Right-handed alpha
Helix 115	AM7	C	759	770	Right-handed alpha
Helix 116	AM8	C	792	800	Right-handed alpha
Helix 117	AM9	C	801	804	Right-handed 310

There are 38 sheets in PDB entry 6JFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	4	12	parallel
Strand 3	A	77	79	parallel
Strand 4	A	101	103	parallel
Strand 5	A	119	120	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	173	175	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	247	250	parallel
Strand 3	A	361	367	anti-parallel
Strand 4	A	370	378	anti-parallel
Strand 5	A	382	384	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	346	347	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	451	454	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	431	432	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	500	first strand
Strand 2	A	737	738	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	732	734	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	708	first strand
Strand 2	A	509	514	anti-parallel
Strand 3	A	722	725	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	47	48	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	52	55	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	118	120	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	143	148	parallel
Strand 3	B	198	200	parallel
Strand 4	B	227	228	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	346	350	anti-parallel
Strand 3	B	355	358	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	366	first strand
Strand 2	B	371	377	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	407	first strand
Strand 2	B	451	452	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	431	432	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	489	first strand
Strand 2	B	732	737	anti-parallel
Strand 3	B	505	507	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	708	first strand
Strand 2	B	509	514	anti-parallel
Strand 3	B	722	725	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	654	first strand
Strand 2	B	703	705	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	47	49	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	56	first strand
Strand 2	D	8	13	parallel
Strand 3	D	78	79	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	119	120	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	146	148	parallel
Strand 3	D	199	200	parallel
Strand 4	D	225	228	parallel
Strand 5	D	247	252	parallel
Strand 6	D	362	367	anti-parallel
Strand 7	D	370	378	anti-parallel
Strand 8	D	382	384	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	342	first strand
Strand 2	D	345	347	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	409	first strand
Strand 2	D	450	454	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	418	first strand
Strand 2	D	431	432	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	489	first strand
Strand 2	D	732	737	anti-parallel
Strand 3	D	500	507	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	652	654	first strand
Strand 2	D	703	708	parallel
Strand 3	D	509	514	anti-parallel
Strand 4	D	722	725	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	47	49	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	53	55	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	118	120	parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	146	148	parallel
Strand 3	C	197	200	parallel
Strand 4	C	225	227	parallel
Strand 5	C	247	250	parallel
Strand 6	C	361	366	anti-parallel
Strand 7	C	371	378	anti-parallel
Strand 8	C	382	384	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	345	349	anti-parallel
Strand 3	C	356	358	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	454	first strand
Strand 2	C	405	409	parallel
Strand 3	C	483	485	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	418	first strand
Strand 2	C	431	432	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	507	first strand
Strand 2	C	732	734	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	655	first strand
Strand 2	C	703	708	parallel
Strand 3	C	509	514	anti-parallel
Strand 4	C	722	725	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JFZ