Analysis of interatomic Contacts of Structural Units in PDB entry:
6JH5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JH5 entry

There is 1 chain in PDB entry 6JH5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 21LYS 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 6JH5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 129Right-handed alpha
Helix 2
AA2
A
203 213Right-handed 310
Helix 3
AA3
A
234 238Right-handed 310
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There are 3 sheets in PDB entry 6JH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
240 251anti-parallel
Strand 3
A
69 79anti-parallel
Strand 4
A
63 66anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
82 86parallel
Strand 3
A
69 79anti-parallel
Strand 4
A
240 251anti-parallel
Strand 5
A
100 107anti-parallel
Strand 6
A
177 183anti-parallel
Strand 7
A
187 192anti-parallel
Strand 8
A
195 201anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
88 90anti-parallel
Strand 3
A
216 224anti-parallel
Strand 4
A
114 122anti-parallel
Strand 5
A
135 140anti-parallel
Strand 6
A
147 155anti-parallel
Strand 7
A
161 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il