Analysis of interatomic Contacts of Structural Units in PDB entry:
6JHI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JHI entry

There is 1 chain in PDB entry 6JHI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 9ARG 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6JHI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed 310
Helix 2
AA2
A
27 33Right-handed 310
Helix 3
AA3
A
123 127Right-handed 310
Helix 4
AA4
A
133 138Right-handed 310
Helix 5
AA5
A
141 145Right-handed 310
Helix 6
AA6
A
152 156Right-handed 310
Helix 7
AA7
A
162 168Right-handed alpha
Helix 8
AA8
A
179 185Right-handed 310
Helix 9
AA9
A
190 194Right-handed 310
Helix 10
AB1
A
196 204Right-handed alpha
Helix 11
AB2
A
246 249Right-handed 310
Helix 12
AB3
A
254 272Right-handed alpha
Helix 13
AB4
A
291 297Right-handed alpha
Helix 14
AB5
A
324 343Right-handed alpha
Helix 15
AB6
A
351 355Right-handed 310
Helix 16
AB7
A
356 371Right-handed alpha
Helix 17
AB8
A
388 392Right-handed 310
Helix 18
AB9
A
394 401Right-handed 310
Helix 19
AC1
A
408 417Right-handed alpha
Helix 20
AC2
A
434 443Right-handed alpha
Helix 21
AC3
A
458 460Right-handed 310
Helix 22
AC4
A
473 482Right-handed alpha
Helix 23
AC5
A
486 503Right-handed alpha
Helix 24
AC6
A
513 517Right-handed 310
Helix 25
AC7
A
530 535Right-handed alpha
Helix 26
AC8
A
537 544Right-handed alpha
Helix 27
AC9
A
544 561Right-handed alpha
Helix 28
AD1
A
562 566Right-handed 310
Helix 29
AD2
A
568 575Right-handed alpha
Helix 30
AD3
A
593 597Right-handed 310
Helix 31
AD4
A
628 630Right-handed 310
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There are 7 sheets in PDB entry 6JHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
50 55anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
81 82anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
61 67anti-parallel
Strand 3
A
100 107anti-parallel
Strand 4
A
110 114anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
61 67anti-parallel
Strand 3
A
100 107anti-parallel
Strand 4
A
129 130anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
208 211parallel
Strand 3
A
275 280parallel
Strand 4
A
346 349parallel
Strand 5
A
375 378parallel
Strand 6
A
405 407parallel
Strand 7
A
462 464parallel
Strand 8
A
507 511parallel
Strand 9
A
158 161parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
238 244anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 579first strand
Strand 2
A
585 591anti-parallel
Strand 3
A
601 607anti-parallel
Strand 4
A
667 673anti-parallel
Strand 5
A
624 627anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 616first strand
Strand 2
A
660 664anti-parallel
Strand 3
A
632 636anti-parallel
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