Analysis of interatomic Contacts of Structural Units in PDB entry:
6JHP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JHP entry

There are 4 chains in PDB entry 6JHP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 33	GLN 748
B	ASN 33	GLN 748
C	ASN 33	GLN 748
D	ASN 33	GLN 748

There are 71 helices in PDB entry 6JHP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	93	Right-handed 310
Helix 2	AA2	A	174	176	Right-handed 310
Helix 3	AA3	A	296	300	Right-handed 310
Helix 4	AA4	A	322	339	Right-handed alpha
Helix 5	AA5	A	355	360	Right-handed alpha
Helix 6	AA6	A	364	379	Right-handed alpha
Helix 7	AA7	A	417	425	Right-handed alpha
Helix 8	AA8	A	452	458	Right-handed alpha
Helix 9	AA9	A	459	462	Right-handed 310
Helix 10	AB1	A	483	500	Right-handed alpha
Helix 11	AB2	A	521	541	Right-handed alpha
Helix 12	AB3	A	557	564	Right-handed alpha
Helix 13	AB4	A	574	586	Right-handed alpha
Helix 14	AB5	A	590	592	Right-handed 310
Helix 15	AB6	A	611	620	Right-handed alpha
Helix 16	AB7	A	630	634	Right-handed 310
Helix 17	AB8	A	636	657	Right-handed alpha
Helix 18	AB9	A	722	728	Right-handed alpha
Helix 19	AC1	B	88	92	Right-handed 310
Helix 20	AC2	B	174	176	Right-handed 310
Helix 21	AC3	B	297	300	Right-handed 310
Helix 22	AC4	B	322	339	Right-handed alpha
Helix 23	AC5	B	355	360	Right-handed alpha
Helix 24	AC6	B	364	378	Right-handed alpha
Helix 25	AC7	B	417	425	Right-handed alpha
Helix 26	AC8	B	452	458	Right-handed alpha
Helix 27	AC9	B	459	462	Right-handed 310
Helix 28	AD1	B	483	501	Right-handed alpha
Helix 29	AD2	B	521	541	Right-handed alpha
Helix 30	AD3	B	552	556	Right-handed 310
Helix 31	AD4	B	557	564	Right-handed alpha
Helix 32	AD5	B	574	586	Right-handed alpha
Helix 33	AD6	B	590	592	Right-handed 310
Helix 34	AD7	B	611	621	Right-handed alpha
Helix 35	AD8	B	636	657	Right-handed alpha
Helix 36	AD9	B	722	728	Right-handed alpha
Helix 37	AE1	C	88	92	Right-handed 310
Helix 38	AE2	C	174	176	Right-handed 310
Helix 39	AE3	C	296	300	Right-handed 310
Helix 40	AE4	C	322	339	Right-handed alpha
Helix 41	AE5	C	355	360	Right-handed alpha
Helix 42	AE6	C	364	378	Right-handed alpha
Helix 43	AE7	C	417	425	Right-handed alpha
Helix 44	AE8	C	452	458	Right-handed alpha
Helix 45	AE9	C	459	462	Right-handed 310
Helix 46	AF1	C	483	501	Right-handed alpha
Helix 47	AF2	C	521	541	Right-handed alpha
Helix 48	AF3	C	557	564	Right-handed alpha
Helix 49	AF4	C	574	586	Right-handed alpha
Helix 50	AF5	C	590	592	Right-handed 310
Helix 51	AF6	C	611	620	Right-handed alpha
Helix 52	AF7	C	630	634	Right-handed 310
Helix 53	AF8	C	636	657	Right-handed alpha
Helix 54	AF9	C	722	728	Right-handed alpha
Helix 55	AG1	D	88	93	Right-handed 310
Helix 56	AG2	D	174	176	Right-handed 310
Helix 57	AG3	D	296	300	Right-handed 310
Helix 58	AG4	D	322	339	Right-handed alpha
Helix 59	AG5	D	355	360	Right-handed alpha
Helix 60	AG6	D	364	378	Right-handed alpha
Helix 61	AG7	D	417	425	Right-handed alpha
Helix 62	AG8	D	452	458	Right-handed alpha
Helix 63	AG9	D	459	462	Right-handed 310
Helix 64	AH1	D	483	499	Right-handed alpha
Helix 65	AH2	D	521	541	Right-handed alpha
Helix 66	AH3	D	557	562	Right-handed alpha
Helix 67	AH4	D	574	586	Right-handed alpha
Helix 68	AH5	D	590	592	Right-handed 310
Helix 69	AH6	D	611	620	Right-handed alpha
Helix 70	AH7	D	636	657	Right-handed alpha
Helix 71	AH8	D	722	728	Right-handed alpha

There are 28 sheets in PDB entry 6JHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	41	45	anti-parallel
Strand 3	A	50	55	anti-parallel
Strand 4	A	62	68	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	193	205	anti-parallel
Strand 3	A	289	294	anti-parallel
Strand 4	A	277	283	anti-parallel
Strand 5	A	233	239	anti-parallel
Strand 6	D	233	239	anti-parallel
Strand 7	D	277	283	anti-parallel
Strand 8	D	289	294	anti-parallel
Strand 9	D	193	205	anti-parallel
Strand 10	D	110	113	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	193	205	anti-parallel
Strand 3	A	289	294	anti-parallel
Strand 4	A	277	283	anti-parallel
Strand 5	A	233	239	anti-parallel
Strand 6	D	233	239	anti-parallel
Strand 7	D	277	283	anti-parallel
Strand 8	D	289	294	anti-parallel
Strand 9	D	193	205	anti-parallel
Strand 10	D	302	304	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	132	first strand
Strand 2	A	151	159	anti-parallel
Strand 3	A	164	173	anti-parallel
Strand 4	A	178	187	anti-parallel
Strand 5	A	315	320	anti-parallel
Strand 6	A	266	271	anti-parallel
Strand 7	A	248	255	anti-parallel
Strand 8	A	211	216	anti-parallel
Strand 9	A	224	229	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	132	first strand
Strand 2	A	151	159	anti-parallel
Strand 3	A	164	173	anti-parallel
Strand 4	A	178	187	anti-parallel
Strand 5	A	309	311	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	382	385	parallel
Strand 3	A	438	443	parallel
Strand 4	A	503	508	parallel
Strand 5	A	545	548	parallel
Strand 6	A	566	568	parallel
Strand 7	A	594	599	parallel
Strand 8	A	624	628	parallel
Strand 9	A	352	354	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	448	first strand
Strand 2	A	477	478	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	663	first strand
Strand 2	A	672	676	anti-parallel
Strand 3	A	682	689	anti-parallel
Strand 4	A	739	747	anti-parallel
Strand 5	A	711	714	anti-parallel
Strand 6	A	719	721	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	41	45	anti-parallel
Strand 3	B	50	55	anti-parallel
Strand 4	B	62	68	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	113	first strand
Strand 2	B	193	205	anti-parallel
Strand 3	B	289	295	anti-parallel
Strand 4	B	277	283	anti-parallel
Strand 5	B	233	238	anti-parallel
Strand 6	C	233	239	anti-parallel
Strand 7	C	277	283	anti-parallel
Strand 8	C	289	294	anti-parallel
Strand 9	C	193	205	anti-parallel
Strand 10	C	110	113	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	304	first strand
Strand 2	B	193	205	anti-parallel
Strand 3	B	289	295	anti-parallel
Strand 4	B	277	283	anti-parallel
Strand 5	B	233	238	anti-parallel
Strand 6	C	233	239	anti-parallel
Strand 7	C	277	283	anti-parallel
Strand 8	C	289	294	anti-parallel
Strand 9	C	193	205	anti-parallel
Strand 10	C	302	304	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	132	first strand
Strand 2	B	151	159	anti-parallel
Strand 3	B	164	173	anti-parallel
Strand 4	B	178	187	anti-parallel
Strand 5	B	315	320	anti-parallel
Strand 6	B	266	271	anti-parallel
Strand 7	B	251	255	anti-parallel
Strand 8	B	211	218	anti-parallel
Strand 9	B	221	229	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	132	first strand
Strand 2	B	151	159	anti-parallel
Strand 3	B	164	173	anti-parallel
Strand 4	B	178	187	anti-parallel
Strand 5	B	309	311	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	382	385	parallel
Strand 3	B	438	443	parallel
Strand 4	B	505	508	parallel
Strand 5	B	545	548	parallel
Strand 6	B	566	568	parallel
Strand 7	B	594	599	parallel
Strand 8	B	624	628	parallel
Strand 9	B	352	354	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	448	first strand
Strand 2	B	477	478	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	663	first strand
Strand 2	B	672	676	anti-parallel
Strand 3	B	682	689	anti-parallel
Strand 4	B	739	747	anti-parallel
Strand 5	B	711	714	anti-parallel
Strand 6	B	719	721	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	41	45	anti-parallel
Strand 3	C	50	55	anti-parallel
Strand 4	C	62	68	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	132	first strand
Strand 2	C	151	159	anti-parallel
Strand 3	C	164	173	anti-parallel
Strand 4	C	178	187	anti-parallel
Strand 5	C	315	320	anti-parallel
Strand 6	C	266	271	anti-parallel
Strand 7	C	251	255	anti-parallel
Strand 8	C	211	216	anti-parallel
Strand 9	C	224	229	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	132	first strand
Strand 2	C	151	159	anti-parallel
Strand 3	C	164	173	anti-parallel
Strand 4	C	178	187	anti-parallel
Strand 5	C	309	311	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	382	385	parallel
Strand 3	C	438	443	parallel
Strand 4	C	503	508	parallel
Strand 5	C	545	548	parallel
Strand 6	C	566	568	parallel
Strand 7	C	594	598	parallel
Strand 8	C	624	627	parallel
Strand 9	C	352	354	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	448	first strand
Strand 2	C	477	478	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	663	first strand
Strand 2	C	672	676	anti-parallel
Strand 3	C	682	689	anti-parallel
Strand 4	C	739	747	anti-parallel
Strand 5	C	711	714	anti-parallel
Strand 6	C	719	721	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	41	45	anti-parallel
Strand 3	D	50	55	anti-parallel
Strand 4	D	62	68	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	132	first strand
Strand 2	D	151	159	anti-parallel
Strand 3	D	164	173	anti-parallel
Strand 4	D	178	187	anti-parallel
Strand 5	D	315	320	anti-parallel
Strand 6	D	266	271	anti-parallel
Strand 7	D	248	255	anti-parallel
Strand 8	D	211	216	anti-parallel
Strand 9	D	224	229	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	132	first strand
Strand 2	D	151	159	anti-parallel
Strand 3	D	164	173	anti-parallel
Strand 4	D	178	187	anti-parallel
Strand 5	D	309	311	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	382	385	parallel
Strand 3	D	438	443	parallel
Strand 4	D	503	508	parallel
Strand 5	D	545	548	parallel
Strand 6	D	566	568	parallel
Strand 7	D	594	599	parallel
Strand 8	D	624	628	parallel
Strand 9	D	352	354	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	448	first strand
Strand 2	D	477	478	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	663	first strand
Strand 2	D	672	676	anti-parallel
Strand 3	D	682	689	anti-parallel
Strand 4	D	739	747	anti-parallel
Strand 5	D	711	714	anti-parallel
Strand 6	D	719	721	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JHP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JHP