Analysis of interatomic Contacts of Structural Units in PDB entry:
6JHQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JHQ entry

There are 5 chains in PDB entry 6JHQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	THR 272
B	GLU 5	SER 220
C	MET 1	GLN 246
D	GLU 1	ARG 221
E	ASP 1	CYS 213

There are 18 helices in PDB entry 6JHQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	63	Right-handed 310
Helix 2	AA2	A	84	89	Right-handed alpha
Helix 3	AA3	A	124	131	Right-handed alpha
Helix 4	AA4	A	178	185	Right-handed alpha
Helix 5	AA5	A	218	224	Right-handed alpha
Helix 6	AA6	B	52	57	Right-handed alpha
Helix 7	AA7	B	83	88	Right-handed alpha
Helix 8	AA8	B	94	99	Right-handed alpha
Helix 9	AA9	B	137	144	Right-handed 310
Helix 10	AB1	C	30	34	Right-handed 310
Helix 11	AB2	C	51	56	Right-handed alpha
Helix 12	AB3	C	101	106	Right-handed alpha
Helix 13	AB4	C	150	154	Right-handed 310
Helix 14	AB5	D	28	32	Right-handed 310
Helix 15	AB6	D	87	91	Right-handed 310
Helix 16	AB7	D	167	169	Right-handed 310
Helix 17	AB8	E	120	125	Right-handed alpha
Helix 18	AB9	E	182	186	Right-handed alpha

There are 24 sheets in PDB entry 6JHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	108	121	anti-parallel
Strand 4	C	219	236	anti-parallel
Strand 5	C	59	67	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	108	121	anti-parallel
Strand 4	C	182	183	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	243	249	anti-parallel
Strand 3	A	141	149	anti-parallel
Strand 4	A	197	202	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	227	234	anti-parallel
Strand 3	A	154	159	anti-parallel
Strand 4	A	190	191	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	256	260	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	23	25	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	64	first strand
Strand 2	B	199	214	anti-parallel
Strand 3	B	103	114	anti-parallel
Strand 4	B	156	161	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	199	214	anti-parallel
Strand 3	B	103	114	anti-parallel
Strand 4	B	170	171	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	82	first strand
Strand 2	B	180	188	anti-parallel
Strand 3	B	123	130	anti-parallel
Strand 4	B	146	150	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	200	211	anti-parallel
Strand 3	C	128	137	anti-parallel
Strand 4	C	157	161	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	90	first strand
Strand 2	C	95	96	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	23	25	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	115	118	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	115	118	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	106	111	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	81	84	anti-parallel
Strand 3	D	68	69	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	143	153	anti-parallel
Strand 3	D	183	192	anti-parallel
Strand 4	D	171	173	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	143	153	anti-parallel
Strand 3	D	183	192	anti-parallel
Strand 4	D	177	178	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	202	207	anti-parallel
Strand 3	D	212	213	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	202	207	anti-parallel
Strand 3	D	216	217	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	19	29	anti-parallel
Strand 3	E	61	74	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	101	105	parallel
Strand 3	E	83	88	anti-parallel
Strand 4	E	33	37	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	52	53	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	138	first strand
Strand 2	E	172	181	anti-parallel
Strand 3	E	158	162	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	149	first strand
Strand 2	E	190	196	anti-parallel
Strand 3	E	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JHQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JHQ