Analysis of interatomic Contacts of Structural Units in PDB entry:
6JHR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JHR entry

There are 5 chains in PDB entry 6JHR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3THR 272
B
 GLU 5SER 220
C
 MET 1GLN 246
D
 ASP 1CYS 213
E
 GLU 1ARG 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 6JHR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 62Right-handed alpha
Helix 2
AA2
A
84 89Right-handed alpha
Helix 3
AA3
A
124 131Right-handed alpha
Helix 4
AA4
A
178 186Right-handed alpha
Helix 5
AA5
A
216 218Right-handed 310
Helix 6
AA6
A
219 224Right-handed alpha
Helix 7
AA7
B
52 57Right-handed alpha
Helix 8
AA8
B
83 88Right-handed alpha
Helix 9
AA9
B
94 99Right-handed alpha
Helix 10
AB1
B
137 144Right-handed 310
Helix 11
AB2
C
52 57Right-handed alpha
Helix 12
AB3
C
99 105Right-handed alpha
Helix 13
AB4
D
120 125Right-handed alpha
Helix 14
AB5
D
182 186Right-handed alpha
Helix 15
AB6
E
87 91Right-handed 310
Back to top of page

There are 20 sheets in PDB entry 6JHR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
C
168 172anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
222 236anti-parallel
Strand 5
C
59 64anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 100first strand
Strand 2
A
243 251anti-parallel
Strand 3
A
141 149anti-parallel
Strand 4
A
197 202anti-parallel
Strand 5
C
27 28parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
154 160anti-parallel
Strand 5
A
187 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
256 260anti-parallel
Strand 4
C
47 48anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 69first strand
Strand 2
B
199 214anti-parallel
Strand 3
B
103 115anti-parallel
Strand 4
B
156 161anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 69first strand
Strand 2
B
199 214anti-parallel
Strand 3
B
103 115anti-parallel
Strand 4
B
170 171anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 82first strand
Strand 2
B
181 191anti-parallel
Strand 3
B
121 128anti-parallel
Strand 4
B
146 150anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 80first strand
Strand 2
C
200 205anti-parallel
Strand 3
C
130 137anti-parallel
Strand 4
C
157 161anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 90first strand
Strand 2
C
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
71 74anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
101 105parallel
Strand 3
D
83 88anti-parallel
Strand 4
D
33 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 48first strand
Strand 2
D
52 53anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 117first strand
Strand 2
D
128 136anti-parallel
Strand 3
D
173 181anti-parallel
Strand 4
D
158 162anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 153first strand
Strand 2
D
144 149anti-parallel
Strand 3
D
190 196anti-parallel
Strand 4
D
204 209anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
17 23anti-parallel
Strand 3
E
80 84anti-parallel
Strand 4
E
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 101anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
46 51anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 101anti-parallel
Strand 4
E
106 108anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
130 132first strand
Strand 2
E
143 153anti-parallel
Strand 3
E
182 192anti-parallel
Strand 4
E
172 173anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
130 132first strand
Strand 2
E
143 153anti-parallel
Strand 3
E
182 192anti-parallel
Strand 4
E
177 179anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 162first strand
Strand 2
E
202 206anti-parallel
Strand 3
E
213 217anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il