Analysis of interatomic Contacts of Structural Units in PDB entry:
6JI2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JI2 entry

There are 5 chains in PDB entry 6JI2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	LYS 435
B	SER -1	ARG 355
E	LYS 4	LYS 435
F	SER -1	ARG 355
X	SER 103	PHE 111

There are 51 helices in PDB entry 6JI2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	31	Right-handed alpha
Helix 2	AA2	A	34	48	Right-handed alpha
Helix 3	AA3	A	55	59	Right-handed 310
Helix 4	AA4	A	62	69	Right-handed alpha
Helix 5	AA5	A	94	96	Right-handed 310
Helix 6	AA6	A	97	106	Right-handed alpha
Helix 7	AA7	A	120	126	Right-handed alpha
Helix 8	AA8	A	130	142	Right-handed alpha
Helix 9	AA9	A	162	181	Right-handed alpha
Helix 10	AB1	A	183	187	Right-handed 310
Helix 11	AB2	A	214	222	Right-handed alpha
Helix 12	AB3	A	404	407	Right-handed 310
Helix 13	AB4	B	19	30	Right-handed alpha
Helix 14	AB5	B	113	121	Right-handed alpha
Helix 15	AB6	B	166	190	Right-handed alpha
Helix 16	AB7	B	201	214	Right-handed alpha
Helix 17	AB8	B	227	236	Right-handed alpha
Helix 18	AB9	B	238	245	Right-handed alpha
Helix 19	AC1	B	248	266	Right-handed alpha
Helix 20	AC2	B	267	269	Right-handed 310
Helix 21	AC3	B	274	284	Right-handed alpha
Helix 22	AC4	B	295	299	Right-handed 310
Helix 23	AC5	B	301	318	Right-handed alpha
Helix 24	AC6	B	331	339	Right-handed 310
Helix 25	AC7	B	350	354	Right-handed 310
Helix 26	AC8	E	18	31	Right-handed alpha
Helix 27	AC9	E	34	48	Right-handed alpha
Helix 28	AD1	E	55	59	Right-handed 310
Helix 29	AD2	E	62	69	Right-handed alpha
Helix 30	AD3	E	94	96	Right-handed 310
Helix 31	AD4	E	97	108	Right-handed alpha
Helix 32	AD5	E	120	127	Right-handed alpha
Helix 33	AD6	E	130	143	Right-handed alpha
Helix 34	AD7	E	162	181	Right-handed alpha
Helix 35	AD8	E	183	187	Right-handed 310
Helix 36	AD9	E	214	221	Right-handed alpha
Helix 37	AE1	E	303	307	Right-handed 310
Helix 38	AE2	E	404	407	Right-handed 310
Helix 39	AE3	F	19	30	Right-handed alpha
Helix 40	AE4	F	84	88	Right-handed 310
Helix 41	AE5	F	113	122	Right-handed alpha
Helix 42	AE6	F	166	190	Right-handed alpha
Helix 43	AE7	F	201	214	Right-handed alpha
Helix 44	AE8	F	227	238	Right-handed alpha
Helix 45	AE9	F	238	245	Right-handed alpha
Helix 46	AF1	F	248	266	Right-handed alpha
Helix 47	AF2	F	274	284	Right-handed alpha
Helix 48	AF3	F	294	299	Right-handed alpha
Helix 49	AF4	F	301	318	Right-handed alpha
Helix 50	AF5	F	333	339	Right-handed 310
Helix 51	AF6	F	350	354	Right-handed 310

There are 16 sheets in PDB entry 6JI2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	85	90	anti-parallel
Strand 3	A	6	12	parallel
Strand 4	A	110	116	parallel
Strand 5	A	146	152	parallel
Strand 6	A	189	191	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	272	281	anti-parallel
Strand 3	A	294	300	anti-parallel
Strand 4	A	247	253	anti-parallel
Strand 5	A	235	243	anti-parallel
Strand 6	A	312	315	anti-parallel
Strand 7	A	264	268	anti-parallel
Strand 8	A	272	281	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	288	289	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	352	365	anti-parallel
Strand 3	A	346	349	anti-parallel
Strand 4	A	409	414	anti-parallel
Strand 5	A	417	429	anti-parallel
Strand 6	A	322	332	anti-parallel
Strand 7	A	396	397	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	352	365	anti-parallel
Strand 3	A	385	392	anti-parallel
Strand 4	A	322	332	anti-parallel
Strand 5	A	396	397	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	12	16	anti-parallel
Strand 3	B	104	107	anti-parallel
Strand 4	B	35	45	anti-parallel
Strand 5	B	51	67	anti-parallel
Strand 6	B	74	82	anti-parallel
Strand 7	B	93	98	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	156	first strand
Strand 2	B	138	144	anti-parallel
Strand 3	B	129	134	anti-parallel
Strand 4	B	193	198	parallel
Strand 5	B	218	223	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	341	345	anti-parallel
Strand 3	B	287	293	anti-parallel
Strand 4	B	321	325	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	80	first strand
Strand 2	E	85	90	anti-parallel
Strand 3	E	6	13	parallel
Strand 4	E	110	116	parallel
Strand 5	E	146	152	parallel
Strand 6	E	189	191	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	286	first strand
Strand 2	E	272	281	anti-parallel
Strand 3	E	294	300	anti-parallel
Strand 4	E	247	253	anti-parallel
Strand 5	E	235	243	anti-parallel
Strand 6	E	312	315	anti-parallel
Strand 7	E	264	268	anti-parallel
Strand 8	E	272	281	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	260	first strand
Strand 2	E	288	289	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	375	first strand
Strand 2	E	352	365	anti-parallel
Strand 3	E	346	349	anti-parallel
Strand 4	E	409	414	anti-parallel
Strand 5	E	417	429	anti-parallel
Strand 6	E	322	332	anti-parallel
Strand 7	E	396	397	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	375	first strand
Strand 2	E	352	365	anti-parallel
Strand 3	E	385	392	anti-parallel
Strand 4	E	322	332	anti-parallel
Strand 5	E	396	397	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	12	15	anti-parallel
Strand 3	F	104	107	anti-parallel
Strand 4	F	35	45	anti-parallel
Strand 5	F	51	67	anti-parallel
Strand 6	F	73	82	anti-parallel
Strand 7	F	96	99	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	156	first strand
Strand 2	F	138	145	anti-parallel
Strand 3	F	129	134	anti-parallel
Strand 4	F	193	198	parallel
Strand 5	F	218	223	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	341	345	anti-parallel
Strand 3	F	287	293	anti-parallel
Strand 4	F	321	325	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JI2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JI2