Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JIF entry

There are 2 chains in PDB entry 6JIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8VAL 340
B
 ILE 7VAL 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6JIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
76 91Right-handed alpha
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
113 116Right-handed 310
Helix 6
AA6
A
158 161Right-handed 310
Helix 7
AA7
A
186 203Right-handed alpha
Helix 8
AA8
A
247 260Right-handed alpha
Helix 9
AA9
A
271 276Right-handed 310
Helix 10
AB1
A
312 327Right-handed alpha
Helix 11
AB2
B
8 12Right-handed 310
Helix 12
AB3
B
49 54Right-handed alpha
Helix 13
AB4
B
76 91Right-handed alpha
Helix 14
AB5
B
97 112Right-handed alpha
Helix 15
AB6
B
113 116Right-handed 310
Helix 16
AB7
B
186 203Right-handed alpha
Helix 17
AB8
B
247 260Right-handed alpha
Helix 18
AB9
B
271 276Right-handed 310
Helix 19
AC1
B
312 327Right-handed alpha
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There are 9 sheets in PDB entry 6JIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
145 156anti-parallel
Strand 4
A
123 134anti-parallel
Strand 5
A
57 59anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
145 156anti-parallel
Strand 4
A
123 134anti-parallel
Strand 5
A
62 66anti-parallel
Strand 6
A
72 75anti-parallel
Strand 7
A
337 339anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
B
42 46anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
166 170parallel
Strand 4
A
289 298parallel
Strand 5
A
278 285anti-parallel
Strand 6
A
226 231anti-parallel
Strand 7
A
235 239anti-parallel
Strand 8
A
264 268parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
166 170parallel
Strand 4
A
289 298parallel
Strand 5
A
301 304anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
22 28anti-parallel
Strand 3
B
145 155anti-parallel
Strand 4
B
124 134anti-parallel
Strand 5
B
57 59anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
22 28anti-parallel
Strand 3
B
145 155anti-parallel
Strand 4
B
124 134anti-parallel
Strand 5
B
62 66anti-parallel
Strand 6
B
72 75anti-parallel
Strand 7
B
337 339anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 222first strand
Strand 2
B
208 211anti-parallel
Strand 3
B
166 170parallel
Strand 4
B
289 298parallel
Strand 5
B
278 285anti-parallel
Strand 6
B
226 231anti-parallel
Strand 7
B
236 239anti-parallel
Strand 8
B
265 268parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 222first strand
Strand 2
B
208 211anti-parallel
Strand 3
B
166 170parallel
Strand 4
B
289 298parallel
Strand 5
B
301 304anti-parallel
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