Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JIJ entry

There are 6 chains in PDB entry 6JIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 1	GLY 297
C	SER 1	VAL 298
A	SER 1	GLY 297
D	ALA 2	LEU 4
E	ALA 2	LEU 4
F	ALA 2	LEU 4

There are 28 helices in PDB entry 6JIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	13	15	Right-handed 310
Helix 2	AA2	B	41	44	Right-handed 310
Helix 3	AA3	B	51	59	Right-handed alpha
Helix 4	AA4	B	60	64	Right-handed 310
Helix 5	AA5	B	198	212	Right-handed alpha
Helix 6	AA6	B	224	233	Right-handed alpha
Helix 7	AA7	B	243	254	Right-handed alpha
Helix 8	AA8	B	256	268	Right-handed alpha
Helix 9	AA9	B	287	296	Right-handed alpha
Helix 10	AB1	C	13	15	Right-handed 310
Helix 11	AB2	C	41	44	Right-handed 310
Helix 12	AB3	C	51	56	Right-handed alpha
Helix 13	AB4	C	57	59	Right-handed 310
Helix 14	AB5	C	60	62	Right-handed 310
Helix 15	AB6	C	198	212	Right-handed alpha
Helix 16	AB7	C	224	233	Right-handed alpha
Helix 17	AB8	C	243	254	Right-handed alpha
Helix 18	AB9	C	256	267	Right-handed alpha
Helix 19	AC1	C	287	296	Right-handed alpha
Helix 20	AC2	A	13	15	Right-handed 310
Helix 21	AC3	A	41	44	Right-handed 310
Helix 22	AC4	A	51	59	Right-handed alpha
Helix 23	AC5	A	60	62	Right-handed 310
Helix 24	AC6	A	198	212	Right-handed alpha
Helix 25	AC7	A	224	233	Right-handed alpha
Helix 26	AC8	A	243	254	Right-handed alpha
Helix 27	AC9	A	256	268	Right-handed alpha
Helix 28	AD1	A	287	294	Right-handed alpha

There are 10 sheets in PDB entry 6JIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	65	68	anti-parallel
Strand 3	B	17	22	anti-parallel
Strand 4	B	25	32	anti-parallel
Strand 5	B	35	39	anti-parallel
Strand 6	B	84	89	anti-parallel
Strand 7	B	75	81	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	154	166	parallel
Strand 3	B	146	151	anti-parallel
Strand 4	B	109	116	anti-parallel
Strand 5	B	119	127	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	154	166	parallel
Strand 3	B	169	173	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	64	68	anti-parallel
Strand 3	C	17	22	anti-parallel
Strand 4	C	25	32	anti-parallel
Strand 5	C	35	39	anti-parallel
Strand 6	C	84	89	anti-parallel
Strand 7	C	75	77	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	64	68	anti-parallel
Strand 3	C	17	22	anti-parallel
Strand 4	C	25	32	anti-parallel
Strand 5	C	35	39	anti-parallel
Strand 6	C	84	89	anti-parallel
Strand 7	C	80	81	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	155	166	parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	109	116	anti-parallel
Strand 5	C	119	127	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	155	166	parallel
Strand 3	C	169	173	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	64	68	anti-parallel
Strand 3	A	17	22	anti-parallel
Strand 4	A	25	32	anti-parallel
Strand 5	A	35	39	anti-parallel
Strand 6	A	84	88	anti-parallel
Strand 7	A	80	81	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	154	166	parallel
Strand 3	A	146	151	anti-parallel
Strand 4	A	109	116	anti-parallel
Strand 5	A	119	127	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	154	166	parallel
Strand 3	A	169	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIJ