Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JIL entry

There are 4 chains in PDB entry 6JIL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	LYS 298
B	MSE 1	LYS 298
C	MSE 1	LYS 298
D	MSE 1	LYS 298

There are 56 helices in PDB entry 6JIL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	18	29	Right-handed alpha
Helix 3	AA3	A	44	48	Right-handed 310
Helix 4	AA4	A	56	61	Right-handed 310
Helix 5	AA5	A	62	77	Right-handed alpha
Helix 6	AA6	A	82	90	Right-handed alpha
Helix 7	AA7	A	93	101	Right-handed alpha
Helix 8	AA8	A	116	128	Right-handed alpha
Helix 9	AA9	A	154	168	Right-handed alpha
Helix 10	AB1	A	180	185	Right-handed alpha
Helix 11	AB2	A	216	218	Right-handed 310
Helix 12	AB3	A	226	245	Right-handed alpha
Helix 13	AB4	A	278	282	Right-handed 310
Helix 14	AB5	A	284	297	Right-handed alpha
Helix 15	AB6	B	12	16	Right-handed 310
Helix 16	AB7	B	18	30	Right-handed alpha
Helix 17	AB8	B	44	48	Right-handed 310
Helix 18	AB9	B	56	61	Right-handed 310
Helix 19	AC1	B	62	75	Right-handed alpha
Helix 20	AC2	B	82	90	Right-handed alpha
Helix 21	AC3	B	93	101	Right-handed alpha
Helix 22	AC4	B	116	128	Right-handed alpha
Helix 23	AC5	B	154	168	Right-handed alpha
Helix 24	AC6	B	180	185	Right-handed alpha
Helix 25	AC7	B	216	218	Right-handed 310
Helix 26	AC8	B	226	245	Right-handed alpha
Helix 27	AC9	B	278	282	Right-handed 310
Helix 28	AD1	B	284	298	Right-handed alpha
Helix 29	AD2	C	12	16	Right-handed 310
Helix 30	AD3	C	18	30	Right-handed alpha
Helix 31	AD4	C	44	48	Right-handed 310
Helix 32	AD5	C	56	61	Right-handed 310
Helix 33	AD6	C	62	77	Right-handed alpha
Helix 34	AD7	C	82	90	Right-handed alpha
Helix 35	AD8	C	93	101	Right-handed alpha
Helix 36	AD9	C	116	128	Right-handed alpha
Helix 37	AE1	C	154	168	Right-handed alpha
Helix 38	AE2	C	180	185	Right-handed alpha
Helix 39	AE3	C	216	218	Right-handed 310
Helix 40	AE4	C	226	245	Right-handed alpha
Helix 41	AE5	C	278	282	Right-handed 310
Helix 42	AE6	C	284	297	Right-handed alpha
Helix 43	AE7	D	12	16	Right-handed 310
Helix 44	AE8	D	18	30	Right-handed alpha
Helix 45	AE9	D	44	48	Right-handed 310
Helix 46	AF1	D	56	61	Right-handed 310
Helix 47	AF2	D	62	75	Right-handed alpha
Helix 48	AF3	D	82	90	Right-handed alpha
Helix 49	AF4	D	93	101	Right-handed alpha
Helix 50	AF5	D	116	128	Right-handed alpha
Helix 51	AF6	D	154	168	Right-handed alpha
Helix 52	AF7	D	180	185	Right-handed alpha
Helix 53	AF8	D	216	218	Right-handed 310
Helix 54	AF9	D	226	245	Right-handed alpha
Helix 55	AG1	D	278	282	Right-handed 310
Helix 56	AG2	D	284	298	Right-handed alpha

There are 12 sheets in PDB entry 6JIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	4	8	parallel
Strand 3	A	50	55	parallel
Strand 4	A	78	79	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	172	176	anti-parallel
Strand 3	A	133	138	anti-parallel
Strand 4	A	148	151	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	195	202	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	252	259	anti-parallel
Strand 5	A	265	271	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	37	first strand
Strand 2	B	3	8	parallel
Strand 3	B	50	55	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	172	176	anti-parallel
Strand 3	B	133	138	anti-parallel
Strand 4	B	148	151	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	195	202	anti-parallel
Strand 3	B	186	192	anti-parallel
Strand 4	B	252	259	anti-parallel
Strand 5	B	265	271	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	4	8	parallel
Strand 3	C	50	55	parallel
Strand 4	C	78	79	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	172	176	anti-parallel
Strand 3	C	133	138	anti-parallel
Strand 4	C	148	151	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	195	202	anti-parallel
Strand 3	C	186	192	anti-parallel
Strand 4	C	252	259	anti-parallel
Strand 5	C	265	271	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	37	first strand
Strand 2	D	3	8	parallel
Strand 3	D	50	55	parallel
Strand 4	D	78	79	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	111	first strand
Strand 2	D	172	176	anti-parallel
Strand 3	D	133	138	anti-parallel
Strand 4	D	148	151	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	195	202	anti-parallel
Strand 3	D	186	192	anti-parallel
Strand 4	D	252	259	anti-parallel
Strand 5	D	265	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JIL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIL