Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JIM entry

There are 4 chains in PDB entry 6JIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	SER 463
B	GLY 1	HIS 464
C	U 2	U 9
D	U 2	U 9

There are 41 helices in PDB entry 6JIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	35	Right-handed alpha
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	41	51	Right-handed alpha
Helix 4	AA4	A	78	110	Right-handed alpha
Helix 5	AA5	A	115	120	Right-handed 310
Helix 6	AA6	A	145	147	Right-handed 310
Helix 7	AA7	A	154	158	Right-handed 310
Helix 8	AA8	A	160	169	Right-handed alpha
Helix 9	AA9	A	170	172	Right-handed 310
Helix 10	AB1	A	191	200	Right-handed alpha
Helix 11	AB2	A	210	226	Right-handed alpha
Helix 12	AB3	A	234	241	Right-handed alpha
Helix 13	AB4	A	253	257	Right-handed 310
Helix 14	AB5	A	258	270	Right-handed alpha
Helix 15	AB6	A	314	326	Right-handed alpha
Helix 16	AB7	A	360	371	Right-handed alpha
Helix 17	AB8	A	380	383	Right-handed 310
Helix 18	AB9	A	400	404	Right-handed 310
Helix 19	AC1	A	407	415	Right-handed alpha
Helix 20	AC2	A	430	437	Right-handed alpha
Helix 21	AC3	A	446	463	Right-handed alpha
Helix 22	AC4	B	28	35	Right-handed alpha
Helix 23	AC5	B	36	40	Right-handed 310
Helix 24	AC6	B	41	53	Right-handed alpha
Helix 25	AC7	B	78	110	Right-handed alpha
Helix 26	AC8	B	115	120	Right-handed 310
Helix 27	AC9	B	145	147	Right-handed 310
Helix 28	AD1	B	154	158	Right-handed 310
Helix 29	AD2	B	160	170	Right-handed alpha
Helix 30	AD3	B	191	200	Right-handed alpha
Helix 31	AD4	B	210	226	Right-handed alpha
Helix 32	AD5	B	234	241	Right-handed alpha
Helix 33	AD6	B	254	257	Right-handed 310
Helix 34	AD7	B	258	270	Right-handed alpha
Helix 35	AD8	B	314	326	Right-handed alpha
Helix 36	AD9	B	360	371	Right-handed alpha
Helix 37	AE1	B	379	383	Right-handed alpha
Helix 38	AE2	B	400	404	Right-handed 310
Helix 39	AE3	B	407	415	Right-handed alpha
Helix 40	AE4	B	431	437	Right-handed alpha
Helix 41	AE5	B	446	462	Right-handed alpha

There are 13 sheets in PDB entry 6JIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	11	13	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	24	27	anti-parallel
Strand 3	A	69	72	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	150	153	anti-parallel
Strand 3	A	132	135	anti-parallel
Strand 4	A	140	143	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	205	208	parallel
Strand 3	A	248	252	parallel
Strand 4	A	274	279	parallel
Strand 5	A	181	186	parallel
Strand 6	A	303	307	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	331	332	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	417	424	parallel
Strand 3	A	387	393	parallel
Strand 4	A	354	358	parallel
Strand 5	A	375	378	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	10	13	anti-parallel
Strand 3	B	76	77	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	24	27	anti-parallel
Strand 3	B	69	72	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	150	153	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	140	143	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	205	208	parallel
Strand 3	B	248	252	parallel
Strand 4	B	274	279	parallel
Strand 5	B	181	186	parallel
Strand 6	B	303	307	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	331	332	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	417	424	parallel
Strand 3	B	387	393	parallel
Strand 4	B	354	358	parallel
Strand 5	B	375	378	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIM