Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JIT entry

There are 3 chains in PDB entry 6JIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ALA 298
B
 LYS 5ALA 298
C
 LYS 4ALA 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6JIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
37 40Right-handed 310
Helix 3
AA3
A
41 47Right-handed alpha
Helix 4
AA4
A
54 61Right-handed alpha
Helix 5
AA5
A
71 80Right-handed alpha
Helix 6
AA6
A
81 86Right-handed 310
Helix 7
AA7
A
98 112Right-handed alpha
Helix 8
AA8
A
140 155Right-handed alpha
Helix 9
AA9
A
165 194Right-handed alpha
Helix 10
AB1
A
198 217Right-handed alpha
Helix 11
AB2
A
223 234Right-handed alpha
Helix 12
AB3
A
242 261Right-handed alpha
Helix 13
AB4
A
264 280Right-handed alpha
Helix 14
AB5
A
286 289Right-handed 310
Helix 15
AB6
A
290 295Right-handed alpha
Helix 16
AB7
B
14 27Right-handed alpha
Helix 17
AB8
B
37 46Right-handed alpha
Helix 18
AB9
B
54 61Right-handed alpha
Helix 19
AC1
B
71 79Right-handed alpha
Helix 20
AC2
B
80 86Right-handed 310
Helix 21
AC3
B
98 112Right-handed alpha
Helix 22
AC4
B
140 155Right-handed alpha
Helix 23
AC5
B
165 194Right-handed alpha
Helix 24
AC6
B
198 218Right-handed alpha
Helix 25
AC7
B
219 224Right-handed alpha
Helix 26
AC8
B
226 234Right-handed alpha
Helix 27
AC9
B
242 260Right-handed alpha
Helix 28
AD1
B
264 280Right-handed alpha
Helix 29
AD2
B
286 289Right-handed 310
Helix 30
AD3
B
290 295Right-handed alpha
Helix 31
AD4
C
14 27Right-handed alpha
Helix 32
AD5
C
37 40Right-handed 310
Helix 33
AD6
C
41 47Right-handed alpha
Helix 34
AD7
C
54 60Right-handed alpha
Helix 35
AD8
C
71 80Right-handed alpha
Helix 36
AD9
C
81 86Right-handed 310
Helix 37
AE1
C
98 112Right-handed alpha
Helix 38
AE2
C
124 128Right-handed 310
Helix 39
AE3
C
140 152Right-handed alpha
Helix 40
AE4
C
164 194Right-handed alpha
Helix 41
AE5
C
198 220Right-handed alpha
Helix 42
AE6
C
227 234Right-handed alpha
Helix 43
AE7
C
242 260Right-handed alpha
Helix 44
AE8
C
264 280Right-handed alpha
Helix 45
AE9
C
286 288Right-handed 310
Helix 46
AF1
C
289 295Right-handed alpha
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There are 3 sheets in PDB entry 6JIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
31 34parallel
Strand 3
A
8 11parallel
Strand 4
A
64 67parallel
Strand 5
A
90 93parallel
Strand 6
A
115 122parallel
Strand 7
A
134 138anti-parallel
Strand 8
A
156 161parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
31 34parallel
Strand 3
B
8 11parallel
Strand 4
B
64 67parallel
Strand 5
B
90 93parallel
Strand 6
B
115 122parallel
Strand 7
B
134 138anti-parallel
Strand 8
B
157 161parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
31 34parallel
Strand 3
C
8 11parallel
Strand 4
C
64 67parallel
Strand 5
C
90 93parallel
Strand 6
C
115 121parallel
Strand 7
C
134 138anti-parallel
Strand 8
C
156 161parallel
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