Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JIV entry

There are 4 chains in PDB entry 6JIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MSE 1PRO 605
A
 MSE 1PRO 605
B
 MSE 1PRO 605
C
 MSE 1PRO 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are102 helices in PDB entry 6JIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
14 19Right-handed alpha
Helix 2
AA2
D
37 56Right-handed alpha
Helix 3
AA3
D
97 121Right-handed alpha
Helix 4
AA4
D
129 148Right-handed alpha
Helix 5
AA5
D
165 180Right-handed alpha
Helix 6
AA6
D
217 238Right-handed alpha
Helix 7
AA7
D
253 258Right-handed alpha
Helix 8
AA8
D
260 269Right-handed alpha
Helix 9
AA9
D
273 282Right-handed alpha
Helix 10
AB1
D
286 302Right-handed alpha
Helix 11
AB2
D
312 325Right-handed alpha
Helix 12
AB3
D
331 342Right-handed alpha
Helix 13
AB4
D
351 367Right-handed alpha
Helix 14
AB5
D
374 391Right-handed alpha
Helix 15
AB6
D
399 412Right-handed alpha
Helix 16
AB7
D
418 435Right-handed alpha
Helix 17
AB8
D
449 463Right-handed alpha
Helix 18
AB9
D
464 466Right-handed 310
Helix 19
AC1
D
470 484Right-handed alpha
Helix 20
AC2
D
490 514Right-handed alpha
Helix 21
AC3
D
519 528Right-handed alpha
Helix 22
AC4
D
555 569Right-handed alpha
Helix 23
AC5
D
572 582Right-handed alpha
Helix 24
AC6
D
587 600Right-handed alpha
Helix 25
AC7
D
601 604Right-handed 310
Helix 26
AC8
A
14 19Right-handed alpha
Helix 27
AC9
A
37 56Right-handed alpha
Helix 28
AD1
A
83 87Right-handed 310
Helix 29
AD2
A
97 119Right-handed alpha
Helix 30
AD3
A
129 148Right-handed alpha
Helix 31
AD4
A
165 180Right-handed alpha
Helix 32
AD5
A
218 238Right-handed alpha
Helix 33
AD6
A
253 258Right-handed alpha
Helix 34
AD7
A
260 269Right-handed alpha
Helix 35
AD8
A
273 282Right-handed alpha
Helix 36
AD9
A
286 302Right-handed alpha
Helix 37
AE1
A
312 325Right-handed alpha
Helix 38
AE2
A
331 342Right-handed alpha
Helix 39
AE3
A
351 367Right-handed alpha
Helix 40
AE4
A
374 391Right-handed alpha
Helix 41
AE5
A
399 412Right-handed alpha
Helix 42
AE6
A
417 435Right-handed alpha
Helix 43
AE7
A
449 464Right-handed alpha
Helix 44
AE8
A
469 484Right-handed alpha
Helix 45
AE9
A
490 516Right-handed alpha
Helix 46
AF1
A
519 531Right-handed alpha
Helix 47
AF2
A
555 569Right-handed alpha
Helix 48
AF3
A
572 582Right-handed alpha
Helix 49
AF4
A
587 600Right-handed alpha
Helix 50
AF5
A
601 604Right-handed 310
Helix 51
AF6
B
14 19Right-handed alpha
Helix 52
AF7
B
37 56Right-handed alpha
Helix 53
AF8
B
83 87Right-handed 310
Helix 54
AF9
B
97 121Right-handed alpha
Helix 55
AG1
B
129 148Right-handed alpha
Helix 56
AG2
B
165 180Right-handed alpha
Helix 57
AG3
B
217 238Right-handed alpha
Helix 58
AG4
B
253 258Right-handed alpha
Helix 59
AG5
B
260 269Right-handed alpha
Helix 60
AG6
B
273 282Right-handed alpha
Helix 61
AG7
B
286 302Right-handed alpha
Helix 62
AG8
B
312 325Right-handed alpha
Helix 63
AG9
B
331 341Right-handed alpha
Helix 64
AH1
B
351 367Right-handed alpha
Helix 65
AH2
B
374 391Right-handed alpha
Helix 66
AH3
B
399 412Right-handed alpha
Helix 67
AH4
B
417 436Right-handed alpha
Helix 68
AH5
B
449 464Right-handed alpha
Helix 69
AH6
B
469 484Right-handed alpha
Helix 70
AH7
B
490 516Right-handed alpha
Helix 71
AH8
B
519 528Right-handed alpha
Helix 72
AH9
B
555 569Right-handed alpha
Helix 73
AI1
B
572 582Right-handed alpha
Helix 74
AI2
B
587 600Right-handed alpha
Helix 75
AI3
B
601 604Right-handed 310
Helix 76
AI4
C
14 19Right-handed alpha
Helix 77
AI5
C
37 56Right-handed alpha
Helix 78
AI6
C
83 87Right-handed 310
Helix 79
AI7
C
97 121Right-handed alpha
Helix 80
AI8
C
129 148Right-handed alpha
Helix 81
AI9
C
165 180Right-handed alpha
Helix 82
AJ1
C
217 238Right-handed alpha
Helix 83
AJ2
C
253 258Right-handed alpha
Helix 84
AJ3
C
260 269Right-handed alpha
Helix 85
AJ4
C
273 282Right-handed alpha
Helix 86
AJ5
C
285 302Right-handed alpha
Helix 87
AJ6
C
312 325Right-handed alpha
Helix 88
AJ7
C
331 342Right-handed alpha
Helix 89
AJ8
C
351 367Right-handed alpha
Helix 90
AJ9
C
374 391Right-handed alpha
Helix 91
AK1
C
399 412Right-handed alpha
Helix 92
AK2
C
417 435Right-handed alpha
Helix 93
AK3
C
449 463Right-handed alpha
Helix 94
AK4
C
464 466Right-handed 310
Helix 95
AK5
C
469 476Right-handed alpha
Helix 96
AK6
C
477 483Right-handed alpha
Helix 97
AK7
C
489 514Right-handed alpha
Helix 98
AK8
C
519 531Right-handed alpha
Helix 99
AK9
C
554 567Right-handed alpha
Helix 100
AL1
C
572 581Right-handed alpha
Helix 101
AL2
C
587 600Right-handed alpha
Helix 102
AL3
C
601 604Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6JIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 13first strand
Strand 2
D
303 310anti-parallel
Strand 3
D
63 73parallel
Strand 4
D
90 94anti-parallel
Strand 5
D
23 26parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
304 310anti-parallel
Strand 3
A
67 72parallel
Strand 4
A
90 94anti-parallel
Strand 5
A
23 26parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
303 310anti-parallel
Strand 3
B
63 73parallel
Strand 4
B
90 94anti-parallel
Strand 5
B
23 26parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
303 310anti-parallel
Strand 3
C
63 73parallel
Strand 4
C
90 96anti-parallel
Strand 5
C
23 26parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il