Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JIX entry

There are 4 chains in PDB entry 6JIX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	CYS 446
A	MET 1	ASP 447
C	MET 1	CYS 446
D	MET 1	CYS 446

There are 66 helices in PDB entry 6JIX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	17	Right-handed alpha
Helix 2	AA2	B	51	56	Right-handed alpha
Helix 3	AA3	B	63	77	Right-handed alpha
Helix 4	AA4	B	86	101	Right-handed alpha
Helix 5	AA5	B	113	130	Right-handed alpha
Helix 6	AA6	B	145	152	Right-handed alpha
Helix 7	AA7	B	156	161	Right-handed alpha
Helix 8	AA8	B	176	181	Right-handed alpha
Helix 9	AA9	B	187	207	Right-handed alpha
Helix 10	AB1	B	231	244	Right-handed alpha
Helix 11	AB2	B	263	268	Right-handed 310
Helix 12	AB3	B	278	282	Right-handed 310
Helix 13	AB4	B	295	304	Right-handed alpha
Helix 14	AB5	B	315	332	Right-handed alpha
Helix 15	AB6	B	333	356	Right-handed alpha
Helix 16	AB7	B	392	403	Right-handed alpha
Helix 17	AB8	B	423	446	Right-handed alpha
Helix 18	AB9	A	5	17	Right-handed alpha
Helix 19	AC1	A	51	56	Right-handed alpha
Helix 20	AC2	A	63	77	Right-handed alpha
Helix 21	AC3	A	86	101	Right-handed alpha
Helix 22	AC4	A	113	130	Right-handed alpha
Helix 23	AC5	A	145	152	Right-handed alpha
Helix 24	AC6	A	156	161	Right-handed alpha
Helix 25	AC7	A	187	207	Right-handed alpha
Helix 26	AC8	A	231	244	Right-handed alpha
Helix 27	AC9	A	263	268	Right-handed 310
Helix 28	AD1	A	278	282	Right-handed 310
Helix 29	AD2	A	295	304	Right-handed alpha
Helix 30	AD3	A	315	332	Right-handed alpha
Helix 31	AD4	A	333	356	Right-handed alpha
Helix 32	AD5	A	392	403	Right-handed alpha
Helix 33	AD6	A	423	445	Right-handed alpha
Helix 34	AD7	C	5	17	Right-handed alpha
Helix 35	AD8	C	51	56	Right-handed alpha
Helix 36	AD9	C	63	77	Right-handed alpha
Helix 37	AE1	C	86	101	Right-handed alpha
Helix 38	AE2	C	113	130	Right-handed alpha
Helix 39	AE3	C	145	152	Right-handed alpha
Helix 40	AE4	C	156	161	Right-handed alpha
Helix 41	AE5	C	177	181	Right-handed 310
Helix 42	AE6	C	187	207	Right-handed alpha
Helix 43	AE7	C	231	244	Right-handed alpha
Helix 44	AE8	C	263	268	Right-handed 310
Helix 45	AE9	C	278	282	Right-handed 310
Helix 46	AF1	C	295	304	Right-handed alpha
Helix 47	AF2	C	315	332	Right-handed alpha
Helix 48	AF3	C	333	356	Right-handed alpha
Helix 49	AF4	C	392	403	Right-handed alpha
Helix 50	AF5	C	423	445	Right-handed alpha
Helix 51	AF6	D	5	17	Right-handed alpha
Helix 52	AF7	D	51	56	Right-handed alpha
Helix 53	AF8	D	63	75	Right-handed alpha
Helix 54	AF9	D	86	101	Right-handed alpha
Helix 55	AG1	D	113	130	Right-handed alpha
Helix 56	AG2	D	145	152	Right-handed alpha
Helix 57	AG3	D	156	161	Right-handed alpha
Helix 58	AG4	D	187	207	Right-handed alpha
Helix 59	AG5	D	231	244	Right-handed alpha
Helix 60	AG6	D	263	268	Right-handed 310
Helix 61	AG7	D	278	282	Right-handed 310
Helix 62	AG8	D	295	304	Right-handed alpha
Helix 63	AG9	D	315	332	Right-handed alpha
Helix 64	AH1	D	333	356	Right-handed alpha
Helix 65	AH2	D	392	403	Right-handed alpha
Helix 66	AH3	D	423	445	Right-handed alpha

There are 16 sheets in PDB entry 6JIX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	46	49	anti-parallel
Strand 4	B	405	406	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	D	29	35	parallel
Strand 3	D	38	41	anti-parallel
Strand 4	D	46	49	anti-parallel
Strand 5	D	405	406	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	111	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	274	277	anti-parallel
Strand 4	B	246	250	parallel
Strand 5	B	211	217	parallel
Strand 6	B	133	137	parallel
Strand 7	B	169	172	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	368	376	anti-parallel
Strand 3	B	381	382	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	368	376	anti-parallel
Strand 3	B	413	416	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	46	49	parallel
Strand 3	A	38	41	anti-parallel
Strand 4	A	29	35	anti-parallel
Strand 5	C	84	85	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	111	first strand
Strand 2	A	289	294	anti-parallel
Strand 3	A	274	277	anti-parallel
Strand 4	A	246	250	parallel
Strand 5	A	211	217	parallel
Strand 6	A	133	137	parallel
Strand 7	A	169	172	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	365	first strand
Strand 2	A	368	376	anti-parallel
Strand 3	A	381	382	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	365	first strand
Strand 2	A	368	376	anti-parallel
Strand 3	A	413	416	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	35	first strand
Strand 2	C	38	41	anti-parallel
Strand 3	C	46	49	anti-parallel
Strand 4	C	405	406	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	111	first strand
Strand 2	C	289	294	anti-parallel
Strand 3	C	274	277	anti-parallel
Strand 4	C	246	250	parallel
Strand 5	C	211	217	parallel
Strand 6	C	133	137	parallel
Strand 7	C	169	172	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	365	first strand
Strand 2	C	368	376	anti-parallel
Strand 3	C	381	382	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	365	first strand
Strand 2	C	368	376	anti-parallel
Strand 3	C	413	416	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	111	first strand
Strand 2	D	289	294	anti-parallel
Strand 3	D	274	277	anti-parallel
Strand 4	D	246	250	parallel
Strand 5	D	211	217	parallel
Strand 6	D	133	137	parallel
Strand 7	D	169	172	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	365	first strand
Strand 2	D	368	376	anti-parallel
Strand 3	D	381	382	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	365	first strand
Strand 2	D	368	376	anti-parallel
Strand 3	D	413	416	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JIX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JIX