Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JJ4 entry

There is 1 chain in PDB entry 6JJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 45HIS 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6JJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 56Right-handed alpha
Helix 2
AA2
A
59 78Right-handed alpha
Helix 3
AA3
A
124 128Right-handed alpha
Helix 4
AA4
A
147 164Right-handed alpha
Helix 5
AA5
A
214 225Right-handed alpha
Helix 6
AA6
A
237 250Right-handed alpha
Helix 7
AA7
A
292 296Right-handed 310
Helix 8
AA8
A
304 313Right-handed alpha
Helix 9
AA9
A
322 327Right-handed alpha
Helix 10
AB1
A
327 345Right-handed alpha
Helix 11
AB2
A
355 359Right-handed 310
Helix 12
AB3
A
364 373Right-handed alpha
Helix 13
AB4
A
379 390Right-handed alpha
Helix 14
AB5
A
396 429Right-handed alpha
Helix 15
AB6
A
450 456Right-handed alpha
Helix 16
AB7
A
456 471Right-handed alpha
Helix 17
AB8
A
472 477Right-handed alpha
Helix 18
AB9
A
492 497Right-handed alpha
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There are 3 sheets in PDB entry 6JJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
286 290anti-parallel
Strand 3
A
263 270anti-parallel
Strand 4
A
253 259anti-parallel
Strand 5
A
444 449parallel
Strand 6
A
479 483parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 138first strand
Strand 2
A
114 123anti-parallel
Strand 3
A
102 110anti-parallel
Strand 4
A
178 184parallel
Strand 5
A
230 236parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
195 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il