Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JJ9 entry

There are 3 chains in PDB entry 6JJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLU 39ALA 503
A
 GLU 39ALA 503
E
 GLU 39ALA 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 6JJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
40 56Right-handed alpha
Helix 2
AA2
C
59 79Right-handed alpha
Helix 3
AA3
C
140 145Right-handed 310
Helix 4
AA4
C
147 164Right-handed alpha
Helix 5
AA5
C
214 225Right-handed alpha
Helix 6
AA6
C
237 250Right-handed alpha
Helix 7
AA7
C
272 274Right-handed 310
Helix 8
AA8
C
292 296Right-handed 310
Helix 9
AA9
C
304 313Right-handed alpha
Helix 10
AB1
C
322 326Right-handed 310
Helix 11
AB2
C
327 346Right-handed alpha
Helix 12
AB3
C
354 359Right-handed 310
Helix 13
AB4
C
364 373Right-handed alpha
Helix 14
AB5
C
379 391Right-handed alpha
Helix 15
AB6
C
396 429Right-handed alpha
Helix 16
AB7
C
450 456Right-handed alpha
Helix 17
AB8
C
456 471Right-handed alpha
Helix 18
AB9
C
472 477Right-handed alpha
Helix 19
AC1
C
487 498Right-handed alpha
Helix 20
AC2
A
40 57Right-handed alpha
Helix 21
AC3
A
59 79Right-handed alpha
Helix 22
AC4
A
140 145Right-handed 310
Helix 23
AC5
A
147 164Right-handed alpha
Helix 24
AC6
A
214 225Right-handed alpha
Helix 25
AC7
A
237 250Right-handed alpha
Helix 26
AC8
A
272 274Right-handed 310
Helix 27
AC9
A
292 296Right-handed 310
Helix 28
AD1
A
304 313Right-handed alpha
Helix 29
AD2
A
322 326Right-handed 310
Helix 30
AD3
A
327 346Right-handed alpha
Helix 31
AD4
A
354 359Right-handed 310
Helix 32
AD5
A
364 373Right-handed alpha
Helix 33
AD6
A
379 391Right-handed alpha
Helix 34
AD7
A
396 429Right-handed alpha
Helix 35
AD8
A
450 456Right-handed alpha
Helix 36
AD9
A
456 471Right-handed alpha
Helix 37
AE1
A
472 477Right-handed alpha
Helix 38
AE2
A
486 498Right-handed alpha
Helix 39
AE3
E
40 57Right-handed alpha
Helix 40
AE4
E
59 79Right-handed alpha
Helix 41
AE5
E
140 145Right-handed 310
Helix 42
AE6
E
147 164Right-handed alpha
Helix 43
AE7
E
214 225Right-handed alpha
Helix 44
AE8
E
237 250Right-handed alpha
Helix 45
AE9
E
292 296Right-handed 310
Helix 46
AF1
E
304 313Right-handed alpha
Helix 47
AF2
E
322 327Right-handed alpha
Helix 48
AF3
E
327 346Right-handed alpha
Helix 49
AF4
E
354 359Right-handed 310
Helix 50
AF5
E
364 373Right-handed alpha
Helix 51
AF6
E
379 391Right-handed alpha
Helix 52
AF7
E
396 429Right-handed alpha
Helix 53
AF8
E
450 456Right-handed alpha
Helix 54
AF9
E
456 471Right-handed alpha
Helix 55
AG1
E
472 477Right-handed alpha
Helix 56
AG2
E
487 498Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 6JJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 90first strand
Strand 2
C
286 290anti-parallel
Strand 3
C
263 270anti-parallel
Strand 4
C
253 259anti-parallel
Strand 5
C
444 449parallel
Strand 6
C
479 483parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 138first strand
Strand 2
C
114 123anti-parallel
Strand 3
C
102 110anti-parallel
Strand 4
C
178 184parallel
Strand 5
C
230 236parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 192first strand
Strand 2
C
195 198anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
286 290anti-parallel
Strand 3
A
263 270anti-parallel
Strand 4
A
253 259anti-parallel
Strand 5
A
444 449parallel
Strand 6
A
479 483parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 138first strand
Strand 2
A
114 122anti-parallel
Strand 3
A
103 110anti-parallel
Strand 4
A
178 184parallel
Strand 5
A
230 236parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
195 198anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 90first strand
Strand 2
E
286 290anti-parallel
Strand 3
E
263 270anti-parallel
Strand 4
E
253 259anti-parallel
Strand 5
E
444 449parallel
Strand 6
E
479 483parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 138first strand
Strand 2
E
114 122anti-parallel
Strand 3
E
103 110anti-parallel
Strand 4
E
178 184parallel
Strand 5
E
230 236parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
188 192first strand
Strand 2
E
195 198anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il