Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JJC entry

There are 3 chains in PDB entry 6JJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 56SER 248
B
 ALA 56SER 248
C
 THR 33SER 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6JJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 101Right-handed 310
Helix 2
AA2
A
104 111Right-handed alpha
Helix 3
AA3
A
148 152Right-handed 310
Helix 4
AA4
A
154 164Right-handed alpha
Helix 5
AA5
B
86 88Right-handed 310
Helix 6
AA6
B
97 101Right-handed 310
Helix 7
AA7
B
104 111Right-handed alpha
Helix 8
AA8
B
154 165Right-handed alpha
Helix 9
AA9
C
78 83Right-handed alpha
Helix 10
AB1
C
86 88Right-handed 310
Helix 11
AB2
C
97 101Right-handed 310
Helix 12
AB3
C
105 110Right-handed alpha
Helix 13
AB4
C
111 113Right-handed 310
Helix 14
AB5
C
148 152Right-handed 310
Helix 15
AB6
C
154 165Right-handed alpha
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There are 9 sheets in PDB entry 6JJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 76first strand
Strand 2
A
228 240anti-parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
178 180anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
206 211anti-parallel
Strand 3
A
136 142anti-parallel
Strand 4
A
169 172anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
190 191anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 73first strand
Strand 2
B
230 240anti-parallel
Strand 3
B
122 127anti-parallel
Strand 4
B
177 180anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 95first strand
Strand 2
B
206 211anti-parallel
Strand 3
B
136 142anti-parallel
Strand 4
B
169 172anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
190 191anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 76first strand
Strand 2
C
228 240anti-parallel
Strand 3
C
118 127anti-parallel
Strand 4
C
178 180anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 95first strand
Strand 2
C
206 211anti-parallel
Strand 3
C
136 142anti-parallel
Strand 4
C
169 172anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 116first strand
Strand 2
C
190 191anti-parallel
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