Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JJJ entry

There are 5 chains in PDB entry 6JJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 393	SER 543
B	GLU 393	SER 543
C	GLU 393	SER 543
D	GLU 393	SER 543
E	GLU 393	TRP 433

There are 19 helices in PDB entry 6JJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	396	414	Right-handed alpha
Helix 2	AA2	A	432	443	Right-handed alpha
Helix 3	AA3	A	452	464	Right-handed alpha
Helix 4	AA4	B	396	414	Right-handed alpha
Helix 5	AA5	B	432	443	Right-handed alpha
Helix 6	AA6	B	453	464	Right-handed alpha
Helix 7	AA7	C	396	414	Right-handed alpha
Helix 8	AA8	C	432	443	Right-handed alpha
Helix 9	AA9	C	453	464	Right-handed alpha
Helix 10	AB1	D	396	414	Right-handed alpha
Helix 11	AB2	D	432	443	Right-handed alpha
Helix 12	AB3	D	453	464	Right-handed alpha
Helix 13	AB4	E	396	414	Right-handed alpha
Helix 14	AB5	E	432	443	Right-handed alpha
Helix 15	AB6	E	453	464	Right-handed alpha
Helix 16	AB7	F	397	414	Right-handed alpha
Helix 17	AB8	F	432	443	Right-handed alpha
Helix 18	AB9	F	453	464	Right-handed alpha
Helix 19	AC1	F	490	495	Right-handed alpha

There are 16 sheets in PDB entry 6JJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	419	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	535	539	anti-parallel
Strand 4	A	446	447	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	470	first strand
Strand 2	A	516	519	anti-parallel
Strand 3	A	523	526	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	473	first strand
Strand 2	A	482	483	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	419	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	535	539	anti-parallel
Strand 4	B	446	447	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	469	first strand
Strand 2	B	516	519	anti-parallel
Strand 3	B	523	526	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	473	first strand
Strand 2	B	482	483	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	419	first strand
Strand 2	C	422	426	anti-parallel
Strand 3	C	535	539	anti-parallel
Strand 4	C	446	447	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	483	first strand
Strand 2	C	468	473	anti-parallel
Strand 3	C	516	519	anti-parallel
Strand 4	C	523	526	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	419	first strand
Strand 2	D	422	426	anti-parallel
Strand 3	D	535	539	anti-parallel
Strand 4	D	446	447	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	468	469	first strand
Strand 2	D	516	519	anti-parallel
Strand 3	D	523	526	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	473	first strand
Strand 2	D	482	483	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	417	419	first strand
Strand 2	E	422	426	anti-parallel
Strand 3	E	535	539	anti-parallel
Strand 4	E	446	447	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	468	469	first strand
Strand 2	E	516	519	anti-parallel
Strand 3	E	523	526	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	472	473	first strand
Strand 2	E	482	483	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	417	419	first strand
Strand 2	F	422	426	anti-parallel
Strand 3	F	535	539	anti-parallel
Strand 4	F	446	447	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	482	483	first strand
Strand 2	F	468	473	anti-parallel
Strand 3	F	516	519	anti-parallel
Strand 4	F	523	526	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJJ