Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JJK entry

There are 18 chains in PDB entry 6JJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	GLN 448
B	GLN 11	GLN 448
C	GLN 11	GLN 448
D	GLN 11	GLN 448
E	GLN 11	GLN 448
F	GLN 11	GLN 448
G	CYS 460	ILE 464
H	CYS 460	ILE 464
I	CYS 460	ILE 464
J	CYS 460	ILE 464
K	CYS 460	ILE 464
L	TYR 462	ILE 464
M	CYS 471	ILE 475
N	CYS 471	ILE 475
O	CYS 471	ILE 475
P	CYS 471	ILE 475
Q	CYS 471	ILE 475
R	CYS 471	ILE 475

There are 55 helices in PDB entry 6JJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	23	Right-handed alpha
Helix 2	AA2	A	104	108	Right-handed alpha
Helix 3	AA3	A	154	158	Right-handed 310
Helix 4	AA4	A	169	173	Right-handed 310
Helix 5	AA5	A	244	257	Right-handed alpha
Helix 6	AA6	A	273	280	Right-handed alpha
Helix 7	AA7	A	297	303	Right-handed alpha
Helix 8	AA8	A	320	329	Right-handed alpha
Helix 9	AA9	A	417	427	Right-handed alpha
Helix 10	AB1	B	15	23	Right-handed alpha
Helix 11	AB2	B	104	108	Right-handed alpha
Helix 12	AB3	B	169	173	Right-handed 310
Helix 13	AB4	B	244	255	Right-handed alpha
Helix 14	AB5	B	273	280	Right-handed alpha
Helix 15	AB6	B	297	303	Right-handed alpha
Helix 16	AB7	B	320	329	Right-handed alpha
Helix 17	AB8	B	364	369	Right-handed alpha
Helix 18	AB9	B	417	426	Right-handed alpha
Helix 19	AC1	C	15	23	Right-handed alpha
Helix 20	AC2	C	104	108	Right-handed alpha
Helix 21	AC3	C	154	158	Right-handed 310
Helix 22	AC4	C	169	173	Right-handed 310
Helix 23	AC5	C	244	257	Right-handed alpha
Helix 24	AC6	C	273	280	Right-handed alpha
Helix 25	AC7	C	297	302	Right-handed alpha
Helix 26	AC8	C	320	329	Right-handed alpha
Helix 27	AC9	C	396	400	Right-handed 310
Helix 28	AD1	C	421	426	Right-handed alpha
Helix 29	AD2	D	15	23	Right-handed alpha
Helix 30	AD3	D	104	108	Right-handed alpha
Helix 31	AD4	D	154	158	Right-handed 310
Helix 32	AD5	D	169	173	Right-handed 310
Helix 33	AD6	D	244	257	Right-handed alpha
Helix 34	AD7	D	273	280	Right-handed alpha
Helix 35	AD8	D	297	303	Right-handed alpha
Helix 36	AD9	D	320	329	Right-handed alpha
Helix 37	AE1	D	417	426	Right-handed alpha
Helix 38	AE2	E	15	23	Right-handed alpha
Helix 39	AE3	E	154	158	Right-handed 310
Helix 40	AE4	E	169	173	Right-handed 310
Helix 41	AE5	E	244	258	Right-handed alpha
Helix 42	AE6	E	273	280	Right-handed alpha
Helix 43	AE7	E	297	302	Right-handed alpha
Helix 44	AE8	E	320	329	Right-handed alpha
Helix 45	AE9	E	417	426	Right-handed alpha
Helix 46	AF1	F	15	23	Right-handed alpha
Helix 47	AF2	F	104	108	Right-handed alpha
Helix 48	AF3	F	154	158	Right-handed 310
Helix 49	AF4	F	169	173	Right-handed 310
Helix 50	AF5	F	244	257	Right-handed alpha
Helix 51	AF6	F	273	280	Right-handed alpha
Helix 52	AF7	F	297	303	Right-handed alpha
Helix 53	AF8	F	320	330	Right-handed alpha
Helix 54	AF9	F	394	400	Right-handed alpha
Helix 55	AG1	F	417	426	Right-handed alpha

There are 39 sheets in PDB entry 6JJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	32	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	103	anti-parallel
Strand 4	A	136	142	anti-parallel
Strand 5	A	122	131	anti-parallel
Strand 6	A	112	116	anti-parallel
Strand 7	A	26	32	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	461	463	first strand
Strand 2	A	221	229	anti-parallel
Strand 3	A	239	243	anti-parallel
Strand 4	A	198	201	anti-parallel
Strand 5	A	176	187	anti-parallel
Strand 6	A	163	168	anti-parallel
Strand 7	A	212	215	anti-parallel
Strand 8	A	221	229	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	309	313	anti-parallel
Strand 3	A	338	343	anti-parallel
Strand 4	A	346	351	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	309	313	anti-parallel
Strand 3	A	288	293	anti-parallel
Strand 4	A	267	271	anti-parallel
Strand 5	M	473	474	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	374	378	anti-parallel
Strand 3	A	385	390	anti-parallel
Strand 4	A	406	410	anti-parallel
Strand 5	A	432	438	anti-parallel
Strand 6	A	441	442	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	374	378	anti-parallel
Strand 3	A	385	390	anti-parallel
Strand 4	A	406	410	anti-parallel
Strand 5	A	432	438	anti-parallel
Strand 6	A	445	447	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	84	94	anti-parallel
Strand 3	B	99	103	anti-parallel
Strand 4	B	136	142	anti-parallel
Strand 5	B	122	131	anti-parallel
Strand 6	B	110	116	anti-parallel
Strand 7	B	26	33	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	461	463	first strand
Strand 2	B	221	229	anti-parallel
Strand 3	B	239	243	anti-parallel
Strand 4	B	198	201	anti-parallel
Strand 5	B	176	187	anti-parallel
Strand 6	B	163	168	anti-parallel
Strand 7	B	213	215	anti-parallel
Strand 8	B	221	229	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	338	343	anti-parallel
Strand 4	B	346	351	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	287	293	anti-parallel
Strand 4	B	267	272	anti-parallel
Strand 5	N	473	474	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	374	378	anti-parallel
Strand 3	B	385	390	anti-parallel
Strand 4	B	406	407	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	414	first strand
Strand 2	B	409	410	anti-parallel
Strand 3	B	432	435	anti-parallel
Strand 4	B	445	447	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	441	442	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	33	first strand
Strand 2	C	84	94	anti-parallel
Strand 3	C	99	103	anti-parallel
Strand 4	C	136	141	anti-parallel
Strand 5	C	122	131	anti-parallel
Strand 6	C	110	116	anti-parallel
Strand 7	C	26	33	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	176	187	anti-parallel
Strand 3	C	198	201	anti-parallel
Strand 4	C	239	243	anti-parallel
Strand 5	C	221	228	anti-parallel
Strand 6	C	213	215	anti-parallel
Strand 7	C	163	168	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	317	first strand
Strand 2	C	309	313	anti-parallel
Strand 3	C	338	343	anti-parallel
Strand 4	C	346	351	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	317	first strand
Strand 2	C	309	313	anti-parallel
Strand 3	C	287	293	anti-parallel
Strand 4	C	267	272	anti-parallel
Strand 5	O	473	474	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	406	410	anti-parallel
Strand 3	C	433	438	anti-parallel
Strand 4	C	441	442	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	414	first strand
Strand 2	C	406	410	anti-parallel
Strand 3	C	433	438	anti-parallel
Strand 4	C	445	446	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	33	first strand
Strand 2	D	85	94	anti-parallel
Strand 3	D	99	103	anti-parallel
Strand 4	D	136	141	anti-parallel
Strand 5	D	122	131	anti-parallel
Strand 6	D	110	116	anti-parallel
Strand 7	D	26	33	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	168	first strand
Strand 2	D	176	187	anti-parallel
Strand 3	D	198	201	anti-parallel
Strand 4	D	239	243	anti-parallel
Strand 5	D	221	228	anti-parallel
Strand 6	D	213	215	anti-parallel
Strand 7	D	163	168	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	309	313	anti-parallel
Strand 3	D	337	343	anti-parallel
Strand 4	D	346	352	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	309	313	anti-parallel
Strand 3	D	288	293	anti-parallel
Strand 4	D	267	271	anti-parallel
Strand 5	P	473	474	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	378	first strand
Strand 2	D	385	390	anti-parallel
Strand 3	D	406	407	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	413	414	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	432	434	first strand
Strand 2	D	445	447	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	33	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	99	102	anti-parallel
Strand 4	E	136	142	anti-parallel
Strand 5	E	122	131	anti-parallel
Strand 6	E	110	116	anti-parallel
Strand 7	E	26	33	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	168	first strand
Strand 2	E	176	187	anti-parallel
Strand 3	E	198	201	anti-parallel
Strand 4	E	239	243	anti-parallel
Strand 5	E	221	228	anti-parallel
Strand 6	E	213	215	anti-parallel
Strand 7	E	163	168	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	264	first strand
Strand 2	E	355	356	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	309	310	first strand
Strand 2	E	288	293	anti-parallel
Strand 3	E	267	271	anti-parallel
Strand 4	Q	473	474	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	316	317	first strand
Strand 2	E	312	313	anti-parallel
Strand 3	E	336	343	anti-parallel
Strand 4	E	346	353	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	376	first strand
Strand 2	E	385	390	anti-parallel
Strand 3	E	406	410	anti-parallel
Strand 4	E	432	438	anti-parallel
Strand 5	E	441	442	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	413	414	first strand
Strand 2	E	406	410	anti-parallel
Strand 3	E	432	438	anti-parallel
Strand 4	E	445	447	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	32	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	103	anti-parallel
Strand 4	F	136	141	anti-parallel
Strand 5	F	122	131	anti-parallel
Strand 6	F	112	116	anti-parallel
Strand 7	F	26	32	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	168	first strand
Strand 2	F	176	187	anti-parallel
Strand 3	F	198	201	anti-parallel
Strand 4	F	239	243	anti-parallel
Strand 5	F	221	228	anti-parallel
Strand 6	F	213	215	anti-parallel
Strand 7	F	163	168	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	267	271	first strand
Strand 2	F	288	293	anti-parallel
Strand 3	F	309	313	anti-parallel
Strand 4	F	316	317	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	267	271	first strand
Strand 2	F	288	293	anti-parallel
Strand 3	F	309	313	anti-parallel
Strand 4	F	336	343	anti-parallel
Strand 5	F	346	353	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	378	first strand
Strand 2	F	385	390	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	413	414	first strand
Strand 2	F	406	410	anti-parallel
Strand 3	F	432	438	anti-parallel
Strand 4	F	441	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJK