Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JJO entry

There are 18 chains in PDB entry 6JJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	GLN 448
B	GLN 11	GLN 448
C	GLN 11	GLN 448
D	GLN 11	GLN 448
E	GLN 11	GLN 448
F	GLN 11	GLN 448
G	CYS 460	LEU 464
M	CYS 471	LEU 475
H	CYS 460	LEU 464
N	CYS 471	LEU 475
I	CYS 460	LEU 464
O	CYS 471	LEU 475
J	CYS 460	LEU 464
P	CYS 471	LEU 475
K	CYS 460	LEU 464
Q	CYS 471	LEU 475
L	CYS 460	LEU 464
R	CYS 471	LEU 475

There are 59 helices in PDB entry 6JJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	23	Right-handed alpha
Helix 2	AA2	A	103	108	Right-handed alpha
Helix 3	AA3	A	154	158	Right-handed 310
Helix 4	AA4	A	169	173	Right-handed 310
Helix 5	AA5	A	244	258	Right-handed alpha
Helix 6	AA6	A	273	280	Right-handed alpha
Helix 7	AA7	A	297	303	Right-handed alpha
Helix 8	AA8	A	320	329	Right-handed alpha
Helix 9	AA9	A	396	400	Right-handed 310
Helix 10	AB1	A	417	427	Right-handed alpha
Helix 11	AB2	B	15	23	Right-handed alpha
Helix 12	AB3	B	104	108	Right-handed alpha
Helix 13	AB4	B	154	158	Right-handed 310
Helix 14	AB5	B	169	173	Right-handed 310
Helix 15	AB6	B	244	257	Right-handed alpha
Helix 16	AB7	B	273	280	Right-handed alpha
Helix 17	AB8	B	297	303	Right-handed alpha
Helix 18	AB9	B	320	329	Right-handed alpha
Helix 19	AC1	B	364	369	Right-handed alpha
Helix 20	AC2	B	417	426	Right-handed alpha
Helix 21	AC3	C	15	23	Right-handed alpha
Helix 22	AC4	C	103	108	Right-handed alpha
Helix 23	AC5	C	154	158	Right-handed 310
Helix 24	AC6	C	169	173	Right-handed 310
Helix 25	AC7	C	244	257	Right-handed alpha
Helix 26	AC8	C	273	280	Right-handed alpha
Helix 27	AC9	C	297	303	Right-handed alpha
Helix 28	AD1	C	320	329	Right-handed alpha
Helix 29	AD2	C	396	400	Right-handed 310
Helix 30	AD3	C	417	426	Right-handed alpha
Helix 31	AD4	D	15	23	Right-handed alpha
Helix 32	AD5	D	103	108	Right-handed alpha
Helix 33	AD6	D	154	158	Right-handed 310
Helix 34	AD7	D	169	173	Right-handed 310
Helix 35	AD8	D	244	257	Right-handed alpha
Helix 36	AD9	D	273	280	Right-handed alpha
Helix 37	AE1	D	297	303	Right-handed alpha
Helix 38	AE2	D	320	329	Right-handed alpha
Helix 39	AE3	D	396	400	Right-handed 310
Helix 40	AE4	D	417	426	Right-handed alpha
Helix 41	AE5	E	15	23	Right-handed alpha
Helix 42	AE6	E	103	108	Right-handed alpha
Helix 43	AE7	E	154	158	Right-handed 310
Helix 44	AE8	E	169	173	Right-handed 310
Helix 45	AE9	E	244	258	Right-handed alpha
Helix 46	AF1	E	273	280	Right-handed alpha
Helix 47	AF2	E	297	303	Right-handed alpha
Helix 48	AF3	E	320	329	Right-handed alpha
Helix 49	AF4	E	365	369	Right-handed alpha
Helix 50	AF5	E	417	426	Right-handed alpha
Helix 51	AF6	F	15	23	Right-handed alpha
Helix 52	AF7	F	103	108	Right-handed alpha
Helix 53	AF8	F	154	158	Right-handed 310
Helix 54	AF9	F	169	173	Right-handed 310
Helix 55	AG1	F	244	258	Right-handed alpha
Helix 56	AG2	F	273	280	Right-handed alpha
Helix 57	AG3	F	297	303	Right-handed alpha
Helix 58	AG4	F	320	329	Right-handed alpha
Helix 59	AG5	F	417	426	Right-handed alpha

There are 38 sheets in PDB entry 6JJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	32	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	102	anti-parallel
Strand 4	A	137	142	anti-parallel
Strand 5	A	122	130	anti-parallel
Strand 6	A	112	116	anti-parallel
Strand 7	A	26	32	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	462	463	first strand
Strand 2	A	221	228	anti-parallel
Strand 3	A	239	243	anti-parallel
Strand 4	A	198	201	anti-parallel
Strand 5	A	176	187	anti-parallel
Strand 6	A	163	168	anti-parallel
Strand 7	A	213	215	anti-parallel
Strand 8	A	221	228	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	288	293	anti-parallel
Strand 3	A	267	271	anti-parallel
Strand 4	M	473	474	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	312	313	anti-parallel
Strand 3	A	336	343	anti-parallel
Strand 4	A	346	353	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	385	390	anti-parallel
Strand 3	A	406	410	anti-parallel
Strand 4	A	432	438	anti-parallel
Strand 5	A	441	442	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	414	first strand
Strand 2	A	406	410	anti-parallel
Strand 3	A	432	438	anti-parallel
Strand 4	A	445	447	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	84	94	anti-parallel
Strand 3	B	99	103	anti-parallel
Strand 4	B	136	142	anti-parallel
Strand 5	B	122	131	anti-parallel
Strand 6	B	110	116	anti-parallel
Strand 7	B	26	33	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	176	187	anti-parallel
Strand 3	B	198	201	anti-parallel
Strand 4	B	239	243	anti-parallel
Strand 5	B	221	228	anti-parallel
Strand 6	B	213	215	anti-parallel
Strand 7	B	163	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	336	343	anti-parallel
Strand 4	B	346	353	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	288	293	anti-parallel
Strand 4	B	267	271	anti-parallel
Strand 5	N	473	474	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	374	378	anti-parallel
Strand 3	B	385	390	anti-parallel
Strand 4	B	405	410	anti-parallel
Strand 5	B	413	414	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	374	378	anti-parallel
Strand 3	B	385	390	anti-parallel
Strand 4	B	405	410	anti-parallel
Strand 5	B	432	438	anti-parallel
Strand 6	B	445	447	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	33	first strand
Strand 2	C	84	94	anti-parallel
Strand 3	C	99	102	anti-parallel
Strand 4	C	137	142	anti-parallel
Strand 5	C	122	130	anti-parallel
Strand 6	C	110	116	anti-parallel
Strand 7	C	26	33	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	462	463	first strand
Strand 2	C	221	228	anti-parallel
Strand 3	C	239	243	anti-parallel
Strand 4	C	198	201	anti-parallel
Strand 5	C	176	187	anti-parallel
Strand 6	C	163	168	anti-parallel
Strand 7	C	213	215	anti-parallel
Strand 8	C	221	228	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	288	293	anti-parallel
Strand 3	C	309	310	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	317	first strand
Strand 2	C	312	313	anti-parallel
Strand 3	C	337	343	anti-parallel
Strand 4	C	346	352	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	375	376	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	406	410	anti-parallel
Strand 3	C	413	414	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	406	410	anti-parallel
Strand 3	C	432	437	anti-parallel
Strand 4	C	445	447	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	33	first strand
Strand 2	D	84	94	anti-parallel
Strand 3	D	99	102	anti-parallel
Strand 4	D	137	141	anti-parallel
Strand 5	D	122	130	anti-parallel
Strand 6	D	110	116	anti-parallel
Strand 7	D	26	33	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	462	463	first strand
Strand 2	D	221	228	anti-parallel
Strand 3	D	239	243	anti-parallel
Strand 4	D	198	201	anti-parallel
Strand 5	D	176	187	anti-parallel
Strand 6	D	163	168	anti-parallel
Strand 7	D	213	215	anti-parallel
Strand 8	D	221	228	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	310	first strand
Strand 2	D	288	293	anti-parallel
Strand 3	D	267	271	anti-parallel
Strand 4	P	473	474	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	312	313	anti-parallel
Strand 3	D	338	343	anti-parallel
Strand 4	D	346	351	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	378	first strand
Strand 2	D	385	390	anti-parallel
Strand 3	D	406	410	anti-parallel
Strand 4	D	413	414	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	378	first strand
Strand 2	D	385	390	anti-parallel
Strand 3	D	406	410	anti-parallel
Strand 4	D	432	437	anti-parallel
Strand 5	D	443	447	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	33	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	99	102	anti-parallel
Strand 4	E	136	142	anti-parallel
Strand 5	E	122	131	anti-parallel
Strand 6	E	110	116	anti-parallel
Strand 7	E	26	33	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	152	first strand
Strand 2	K	461	462	first strand
Strand 3	E	213	215	first strand
Strand 4	E	163	168	anti-parallel
Strand 5	E	176	187	anti-parallel
Strand 6	E	198	201	anti-parallel
Strand 7	E	239	243	anti-parallel
Strand 8	E	220	229	anti-parallel
Strand 9	K	461	462	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	264	first strand
Strand 2	E	355	356	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	316	317	first strand
Strand 2	E	309	313	anti-parallel
Strand 3	E	336	343	anti-parallel
Strand 4	E	346	353	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	316	317	first strand
Strand 2	E	309	313	anti-parallel
Strand 3	E	288	293	anti-parallel
Strand 4	E	267	271	anti-parallel
Strand 5	Q	473	474	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	378	first strand
Strand 2	E	385	390	anti-parallel
Strand 3	E	406	410	anti-parallel
Strand 4	E	432	438	anti-parallel
Strand 5	E	441	442	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	413	414	first strand
Strand 2	E	406	410	anti-parallel
Strand 3	E	432	438	anti-parallel
Strand 4	E	445	447	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	32	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	102	anti-parallel
Strand 4	F	136	142	anti-parallel
Strand 5	F	122	131	anti-parallel
Strand 6	F	112	116	anti-parallel
Strand 7	F	26	32	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	168	first strand
Strand 2	F	176	187	anti-parallel
Strand 3	F	198	201	anti-parallel
Strand 4	F	239	243	anti-parallel
Strand 5	F	221	228	anti-parallel
Strand 6	F	212	215	anti-parallel
Strand 7	F	163	168	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	316	317	first strand
Strand 2	F	309	313	anti-parallel
Strand 3	F	336	343	anti-parallel
Strand 4	F	346	353	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	316	317	first strand
Strand 2	F	309	313	anti-parallel
Strand 3	F	288	293	anti-parallel
Strand 4	F	267	271	anti-parallel
Strand 5	R	473	474	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	378	first strand
Strand 2	F	385	390	anti-parallel
Strand 3	F	406	410	anti-parallel
Strand 4	F	432	438	anti-parallel
Strand 5	F	441	442	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	413	414	first strand
Strand 2	F	406	410	anti-parallel
Strand 3	F	432	438	anti-parallel
Strand 4	F	445	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JJO