Analysis of interatomic Contacts of Structural Units in PDB entry:
6JK8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JK8 entry

There are 4 chains in PDB entry 6JK8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 31	TYR 931
B	GLU 31	LYS 928
C	GLY 1	ASN 21
D	ASN 3	THR 27

There are 20 helices in PDB entry 6JK8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	50	Right-handed 310
Helix 2	AA2	A	174	178	Right-handed 310
Helix 3	AA3	A	278	283	Right-handed alpha
Helix 4	AA4	A	370	379	Right-handed alpha
Helix 5	AA5	A	457	467	Right-handed alpha
Helix 6	AA6	A	654	660	Right-handed alpha
Helix 7	AA7	A	706	732	Right-handed alpha
Helix 8	AA8	A	883	890	Right-handed alpha
Helix 9	AA9	B	43	50	Right-handed 310
Helix 10	AB1	B	157	161	Right-handed 310
Helix 11	AB2	B	347	351	Right-handed 310
Helix 12	AB3	B	369	379	Right-handed alpha
Helix 13	AB4	B	398	402	Right-handed 310
Helix 14	AB5	B	456	466	Right-handed alpha
Helix 15	AB6	B	710	728	Right-handed alpha
Helix 16	AB7	B	810	815	Right-handed alpha
Helix 17	AB8	B	882	890	Right-handed alpha
Helix 18	AB9	C	2	7	Right-handed alpha
Helix 19	AC1	C	13	18	Right-handed alpha
Helix 20	AC2	D	10	16	Right-handed alpha

There are 35 sheets in PDB entry 6JK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	54	55	parallel
Strand 3	A	80	81	parallel
Strand 4	A	105	106	parallel
Strand 5	A	135	136	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	59	64	parallel
Strand 3	A	85	90	parallel
Strand 4	A	117	120	parallel
Strand 5	A	141	144	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	200	203	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	248	251	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	275	277	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	302	304	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	321	323	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	341	first strand
Strand 2	A	355	362	parallel
Strand 3	A	383	384	parallel
Strand 4	A	407	408	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	341	first strand
Strand 2	A	355	362	parallel
Strand 3	A	388	391	parallel
Strand 4	A	418	423	parallel
Strand 5	A	445	449	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	499	first strand
Strand 2	A	505	509	anti-parallel
Strand 3	A	565	568	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	555	first strand
Strand 2	A	520	529	anti-parallel
Strand 3	A	584	586	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	555	first strand
Strand 2	A	520	529	anti-parallel
Strand 3	A	576	581	anti-parallel
Strand 4	A	602	605	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	623	first strand
Strand 2	A	626	632	anti-parallel
Strand 3	A	788	792	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	783	first strand
Strand 2	A	641	651	anti-parallel
Strand 3	A	805	808	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	783	first strand
Strand 2	A	641	651	anti-parallel
Strand 3	A	799	802	anti-parallel
Strand 4	A	823	824	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	840	843	first strand
Strand 2	A	849	852	anti-parallel
Strand 3	A	892	894	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	869	first strand
Strand 2	A	878	882	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	903	904	first strand
Strand 2	A	921	922	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	54	55	parallel
Strand 3	B	80	81	parallel
Strand 4	B	105	106	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	59	61	parallel
Strand 3	B	85	88	parallel
Strand 4	B	117	120	parallel
Strand 5	B	142	144	parallel
Strand 6	B	169	170	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	200	203	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	229	230	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	239	first strand
Strand 2	B	248	251	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	256	first strand
Strand 2	B	259	261	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	275	278	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	303	304	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	314	first strand
Strand 2	B	318	323	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	341	first strand
Strand 2	B	355	362	parallel
Strand 3	B	383	384	parallel
Strand 4	B	407	408	parallel
Strand 5	B	440	441	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	341	first strand
Strand 2	B	355	362	parallel
Strand 3	B	388	391	parallel
Strand 4	B	420	423	parallel
Strand 5	B	446	449	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	497	first strand
Strand 2	B	505	509	anti-parallel
Strand 3	B	565	568	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	554	first strand
Strand 2	B	523	528	anti-parallel
Strand 3	B	577	583	anti-parallel
Strand 4	B	602	604	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	618	620	first strand
Strand 2	B	627	630	anti-parallel
Strand 3	B	788	791	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	783	first strand
Strand 2	B	644	650	anti-parallel
Strand 3	B	799	805	anti-parallel
Strand 4	B	822	825	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	840	843	first strand
Strand 2	B	849	852	anti-parallel
Strand 3	B	891	894	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	877	881	first strand
Strand 2	B	863	871	anti-parallel
Strand 3	B	900	910	anti-parallel
Strand 4	B	921	925	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JK8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JK8