Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JKB entry

There are 2 chains in PDB entry 6JKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ARG 244
B
 GLY 1ARG 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6JKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 83Right-handed alpha
Helix 2
AA2
A
96 101Right-handed alpha
Helix 3
AA3
A
102 109Right-handed alpha
Helix 4
AA4
A
117 123Right-handed alpha
Helix 5
AA5
A
144 148Right-handed 310
Helix 6
AA6
A
182 184Right-handed 310
Helix 7
AA7
A
202 214Right-handed alpha
Helix 8
AA8
A
230 242Right-handed alpha
Helix 9
AA9
B
68 83Right-handed alpha
Helix 10
AB1
B
96 101Right-handed alpha
Helix 11
AB2
B
102 109Right-handed alpha
Helix 12
AB3
B
117 123Right-handed alpha
Helix 13
AB4
B
144 148Right-handed 310
Helix 14
AB5
B
202 214Right-handed alpha
Helix 15
AB6
B
230 242Right-handed alpha
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There are 4 sheets in PDB entry 6JKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
32 40anti-parallel
Strand 4
A
46 56anti-parallel
Strand 5
A
59 63anti-parallel
Strand 6
A
87 91parallel
Strand 7
A
112 116parallel
Strand 8
A
133 135parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
177 181anti-parallel
Strand 4
A
219 222parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
23 29anti-parallel
Strand 3
B
32 41anti-parallel
Strand 4
B
45 56anti-parallel
Strand 5
B
59 63anti-parallel
Strand 6
B
87 91parallel
Strand 7
B
112 116parallel
Strand 8
B
133 135parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 157first strand
Strand 2
B
169 172anti-parallel
Strand 3
B
177 181anti-parallel
Strand 4
B
219 222parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il