Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JKC entry

There is 1 chain in PDB entry 6JKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8THR 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6JKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 41Right-handed alpha
Helix 2
AA2
A
46 64Right-handed alpha
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
77 97Right-handed alpha
Helix 5
AA5
A
102 132Right-handed alpha
Helix 6
AA6
A
138 173Right-handed alpha
Helix 7
AA7
A
175 199Right-handed alpha
Helix 8
AA8
A
199 205Right-handed alpha
Helix 9
AA9
A
216 240Right-handed alpha
Helix 10
AB1
A
240 264Right-handed alpha
Helix 11
AB2
A
273 305Right-handed alpha
Helix 12
AB3
A
323 326Right-handed 310
Helix 13
AB4
A
327 343Right-handed alpha
Helix 14
AB5
A
344 345Right-handed 310
Helix 15
AB6
A
356 357Right-handed 310
Helix 16
AB7
A
358 381Right-handed alpha
Helix 17
AB8
A
388 406Right-handed alpha
Helix 18
AB9
A
422 445Right-handed alpha
Helix 19
AC1
A
446 448Right-handed 310
Helix 20
AC2
A
455 484Right-handed alpha
Helix 21
AC3
A
484 492Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6JKC.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
316 319anti-parallel
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