Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JKD entry

There is 1 chain in PDB entry 6JKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8THR 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6JKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 41Right-handed alpha
Helix 2
AA2
A
46 75Right-handed alpha
Helix 3
AA3
A
77 97Right-handed alpha
Helix 4
AA4
A
102 132Right-handed alpha
Helix 5
AA5
A
138 173Right-handed alpha
Helix 6
AA6
A
175 200Right-handed alpha
Helix 7
AA7
A
201 205Right-handed 310
Helix 8
AA8
A
209 213Right-handed 310
Helix 9
AA9
A
216 240Right-handed alpha
Helix 10
AB1
A
240 264Right-handed alpha
Helix 11
AB2
A
273 294Right-handed alpha
Helix 12
AB3
A
296 305Right-handed alpha
Helix 13
AB4
A
323 326Right-handed 310
Helix 14
AB5
A
327 346Right-handed alpha
Helix 15
AB6
A
358 381Right-handed alpha
Helix 16
AB7
A
388 405Right-handed alpha
Helix 17
AB8
A
424 445Right-handed alpha
Helix 18
AB9
A
446 448Right-handed 310
Helix 19
AC1
A
455 492Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6JKD.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
315 319anti-parallel
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