Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JKG entry

There are 2 chains in PDB entry 6JKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 35HIS 271
B
 GLN 36HIS 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6JKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 60Right-handed alpha
Helix 2
AA2
A
87 96Right-handed alpha
Helix 3
AA3
A
113 122Right-handed alpha
Helix 4
AA4
A
122 135Right-handed alpha
Helix 5
AA5
A
145 150Right-handed 310
Helix 6
AA6
A
170 186Right-handed alpha
Helix 7
AA7
A
238 257Right-handed alpha
Helix 8
AA8
A
258 261Right-handed 310
Helix 9
AA9
B
47 60Right-handed alpha
Helix 10
AB1
B
91 96Right-handed alpha
Helix 11
AB2
B
114 122Right-handed alpha
Helix 12
AB3
B
122 135Right-handed alpha
Helix 13
AB4
B
146 150Right-handed 310
Helix 14
AB5
B
170 186Right-handed alpha
Helix 15
AB6
B
238 255Right-handed alpha
Helix 16
AB7
B
257 261Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 6JKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
39 43parallel
Strand 3
A
100 103parallel
Strand 4
A
139 143parallel
Strand 5
A
194 199parallel
Strand 6
A
263 267parallel
Strand 7
B
212 217anti-parallel
Strand 8
A
226 229anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
A
212 217anti-parallel
Strand 3
B
265 267anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
63 68parallel
Strand 3
B
39 43parallel
Strand 4
B
100 103parallel
Strand 5
B
139 143parallel
Strand 6
B
194 198parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il