Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JKH entry

There are 2 chains in PDB entry 6JKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 36GLU 269
B
 GLN 36GLU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6JKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 60Right-handed alpha
Helix 2
AA2
A
87 96Right-handed alpha
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
113 121Right-handed alpha
Helix 5
AA5
A
122 136Right-handed alpha
Helix 6
AA6
A
146 151Right-handed 310
Helix 7
AA7
A
170 186Right-handed alpha
Helix 8
AA8
A
188 192Right-handed 310
Helix 9
AA9
A
232 234Right-handed 310
Helix 10
AB1
A
238 257Right-handed alpha
Helix 11
AB2
A
258 261Right-handed 310
Helix 12
AB3
B
47 60Right-handed alpha
Helix 13
AB4
B
87 96Right-handed alpha
Helix 14
AB5
B
113 122Right-handed alpha
Helix 15
AB6
B
122 135Right-handed alpha
Helix 16
AB7
B
145 151Right-handed 310
Helix 17
AB8
B
170 186Right-handed alpha
Helix 18
AB9
B
188 192Right-handed 310
Helix 19
AC1
B
230 234Right-handed 310
Helix 20
AC2
B
238 255Right-handed alpha
Helix 21
AC3
B
256 261Right-handed 310
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There are 2 sheets in PDB entry 6JKH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
63 68parallel
Strand 3
A
39 43parallel
Strand 4
A
100 103parallel
Strand 5
A
139 143parallel
Strand 6
A
194 199parallel
Strand 7
A
264 267parallel
Strand 8
B
211 218anti-parallel
Strand 9
A
226 230anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
63 68parallel
Strand 3
B
39 43parallel
Strand 4
B
100 103parallel
Strand 5
B
139 143parallel
Strand 6
B
194 199parallel
Strand 7
B
264 267parallel
Strand 8
A
212 218anti-parallel
Strand 9
B
226 229anti-parallel
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