Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JKM entry

There is 1 chain in PDB entry 6JKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1126GLN 1459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6JKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1130 1141Right-handed alpha
Helix 2
AA2
A
1142 1148Right-handed alpha
Helix 3
AA3
A
1210 1224Right-handed alpha
Helix 4
AA4
A
1229 1233Right-handed 310
Helix 5
AA5
A
1257 1270Right-handed alpha
Helix 6
AA6
A
1274 1295Right-handed alpha
Helix 7
AA7
A
1303 1305Right-handed 310
Helix 8
AA8
A
1334 1336Right-handed 310
Helix 9
AA9
A
1348 1352Right-handed 310
Helix 10
AB1
A
1353 1358Right-handed alpha
Helix 11
AB2
A
1364 1381Right-handed alpha
Helix 12
AB3
A
1406 1419Right-handed alpha
Helix 13
AB4
A
1428 1443Right-handed alpha
Helix 14
AB5
A
1443 1458Right-handed alpha
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There are 4 sheets in PDB entry 6JKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1153 1155first strand
Strand 2
A
1238 1241parallel
Strand 3
A
1246 1251anti-parallel
Strand 4
A
1200 1206anti-parallel
Strand 5
A
1187 1194anti-parallel
Strand 6
A
1173 1183anti-parallel
Strand 7
A
1166 1170anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1297 1298first strand
Strand 2
A
1331 1332anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1307 1309first strand
Strand 2
A
1322 1324anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1386 1388first strand
Strand 2
A
1395 1397anti-parallel
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