Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JKS entry

There are 5 chains in PDB entry 6JKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ALA 326
B
 SER 0ALA 326
C
 GLY -1ALA 326
D
 GLY -1ALA 326
E
 GLU 3GLN 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are102 helices in PDB entry 6JKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
17 21Right-handed 310
Helix 3
AA3
A
22 42Right-handed alpha
Helix 4
AA4
A
63 76Right-handed alpha
Helix 5
AA5
A
84 93Right-handed 310
Helix 6
AA6
A
95 105Right-handed alpha
Helix 7
AA7
A
118 127Right-handed alpha
Helix 8
AA8
A
141 157Right-handed alpha
Helix 9
AA9
A
173 187Right-handed alpha
Helix 10
AB1
A
197 201Right-handed 310
Helix 11
AB2
A
203 208Right-handed alpha
Helix 12
AB3
A
210 217Right-handed alpha
Helix 13
AB4
A
228 235Right-handed alpha
Helix 14
AB5
A
244 248Right-handed 310
Helix 15
AB6
A
253 265Right-handed alpha
Helix 16
AB7
A
271 276Right-handed alpha
Helix 17
AB8
A
295 299Right-handed 310
Helix 18
AB9
A
305 326Right-handed alpha
Helix 19
AC1
B
7 11Right-handed 310
Helix 20
AC2
B
17 21Right-handed 310
Helix 21
AC3
B
22 42Right-handed alpha
Helix 22
AC4
B
63 76Right-handed alpha
Helix 23
AC5
B
84 93Right-handed 310
Helix 24
AC6
B
95 105Right-handed alpha
Helix 25
AC7
B
118 127Right-handed alpha
Helix 26
AC8
B
141 157Right-handed alpha
Helix 27
AC9
B
173 187Right-handed alpha
Helix 28
AD1
B
197 201Right-handed 310
Helix 29
AD2
B
203 208Right-handed alpha
Helix 30
AD3
B
210 218Right-handed alpha
Helix 31
AD4
B
228 235Right-handed alpha
Helix 32
AD5
B
271 276Right-handed alpha
Helix 33
AD6
B
295 299Right-handed 310
Helix 34
AD7
B
307 326Right-handed alpha
Helix 35
AD8
C
7 11Right-handed 310
Helix 36
AD9
C
17 21Right-handed 310
Helix 37
AE1
C
22 42Right-handed alpha
Helix 38
AE2
C
63 76Right-handed alpha
Helix 39
AE3
C
88 93Right-handed 310
Helix 40
AE4
C
95 105Right-handed alpha
Helix 41
AE5
C
118 125Right-handed alpha
Helix 42
AE6
C
141 157Right-handed alpha
Helix 43
AE7
C
173 187Right-handed alpha
Helix 44
AE8
C
197 201Right-handed 310
Helix 45
AE9
C
203 208Right-handed alpha
Helix 46
AF1
C
210 218Right-handed alpha
Helix 47
AF2
C
228 235Right-handed alpha
Helix 48
AF3
C
271 276Right-handed alpha
Helix 49
AF4
C
295 299Right-handed 310
Helix 50
AF5
C
307 326Right-handed alpha
Helix 51
AF6
D
7 11Right-handed 310
Helix 52
AF7
D
17 21Right-handed 310
Helix 53
AF8
D
22 42Right-handed alpha
Helix 54
AF9
D
63 76Right-handed alpha
Helix 55
AG1
D
84 93Right-handed 310
Helix 56
AG2
D
95 105Right-handed alpha
Helix 57
AG3
D
118 127Right-handed alpha
Helix 58
AG4
D
141 157Right-handed alpha
Helix 59
AG5
D
173 187Right-handed alpha
Helix 60
AG6
D
197 201Right-handed 310
Helix 61
AG7
D
203 217Right-handed alpha
Helix 62
AG8
D
228 235Right-handed alpha
Helix 63
AG9
D
244 248Right-handed 310
Helix 64
AH1
D
252 265Right-handed alpha
Helix 65
AH2
D
271 276Right-handed alpha
Helix 66
AH3
D
295 299Right-handed 310
Helix 67
AH4
D
305 326Right-handed alpha
Helix 68
AH5
E
7 11Right-handed 310
Helix 69
AH6
E
17 21Right-handed 310
Helix 70
AH7
E
22 42Right-handed alpha
Helix 71
AH8
E
63 76Right-handed alpha
Helix 72
AH9
E
84 93Right-handed 310
Helix 73
AI1
E
95 105Right-handed alpha
Helix 74
AI2
E
118 127Right-handed alpha
Helix 75
AI3
E
141 157Right-handed alpha
Helix 76
AI4
E
173 187Right-handed alpha
Helix 77
AI5
E
197 201Right-handed 310
Helix 78
AI6
E
203 208Right-handed alpha
Helix 79
AI7
E
210 218Right-handed alpha
Helix 80
AI8
E
228 235Right-handed alpha
Helix 81
AI9
E
271 276Right-handed alpha
Helix 82
AJ1
E
295 299Right-handed 310
Helix 83
AJ2
E
307 326Right-handed alpha
Helix 84
AJ3
F
0 4Right-handed alpha
Helix 85
AJ4
F
7 11Right-handed 310
Helix 86
AJ5
F
17 21Right-handed 310
Helix 87
AJ6
F
22 42Right-handed alpha
Helix 88
AJ7
F
63 76Right-handed alpha
Helix 89
AJ8
F
88 93Right-handed 310
Helix 90
AJ9
F
95 105Right-handed alpha
Helix 91
AK1
F
118 125Right-handed alpha
Helix 92
AK2
F
141 157Right-handed alpha
Helix 93
AK3
F
173 187Right-handed alpha
Helix 94
AK4
F
197 201Right-handed 310
Helix 95
AK5
F
203 208Right-handed alpha
Helix 96
AK6
F
210 218Right-handed alpha
Helix 97
AK7
F
228 235Right-handed alpha
Helix 98
AK8
F
256 265Right-handed alpha
Helix 99
AK9
F
266 269Right-handed 310
Helix 100
AL1
F
271 276Right-handed alpha
Helix 101
AL2
F
295 299Right-handed 310
Helix 102
AL3
F
307 326Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 6JKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
53 58parallel
Strand 3
A
109 114parallel
Strand 4
A
131 136parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 224first strand
Strand 2
A
191 195parallel
Strand 3
A
163 167parallel
Strand 4
A
237 240parallel
Strand 5
A
283 285parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
53 58parallel
Strand 3
B
109 114parallel
Strand 4
B
131 136parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 224first strand
Strand 2
B
191 195parallel
Strand 3
B
163 167parallel
Strand 4
B
237 240parallel
Strand 5
B
283 285parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 80first strand
Strand 2
C
53 58parallel
Strand 3
C
109 114parallel
Strand 4
C
131 136parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 224first strand
Strand 2
C
191 195parallel
Strand 3
C
163 167parallel
Strand 4
C
237 240parallel
Strand 5
C
283 285parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 80first strand
Strand 2
D
53 58parallel
Strand 3
D
109 114parallel
Strand 4
D
131 136parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
220 224first strand
Strand 2
D
191 195parallel
Strand 3
D
163 167parallel
Strand 4
D
237 240parallel
Strand 5
D
283 285parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
79 80first strand
Strand 2
E
53 58parallel
Strand 3
E
109 114parallel
Strand 4
E
131 136parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
220 224first strand
Strand 2
E
191 195parallel
Strand 3
E
163 167parallel
Strand 4
E
237 240parallel
Strand 5
E
283 285parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
79 80first strand
Strand 2
F
53 58parallel
Strand 3
F
109 114parallel
Strand 4
F
131 136parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
220 224first strand
Strand 2
F
191 195parallel
Strand 3
F
163 167parallel
Strand 4
F
237 240parallel
Strand 5
F
283 285parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il