Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JKU entry

There are 4 chains in PDB entry 6JKU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU -6	ASN 378
B	LEU -6	ASN 378
C	GLY -1	ASN 378
D	PHE 0	ASN 378

There are 55 helices in PDB entry 6JKU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	37	Right-handed 310
Helix 2	AA2	A	73	86	Right-handed alpha
Helix 3	AA3	A	100	118	Right-handed alpha
Helix 4	AA4	A	133	137	Right-handed 310
Helix 5	AA5	A	141	145	Right-handed 310
Helix 6	AA6	A	149	159	Right-handed alpha
Helix 7	AA7	A	172	176	Right-handed 310
Helix 8	AA8	A	177	184	Right-handed alpha
Helix 9	AA9	A	196	207	Right-handed alpha
Helix 10	AB1	A	227	235	Right-handed alpha
Helix 11	AB2	A	250	262	Right-handed alpha
Helix 12	AB3	A	309	320	Right-handed alpha
Helix 13	AB4	A	324	331	Right-handed alpha
Helix 14	AB5	A	333	340	Right-handed alpha
Helix 15	AB6	B	35	37	Right-handed 310
Helix 16	AB7	B	73	86	Right-handed alpha
Helix 17	AB8	B	100	118	Right-handed alpha
Helix 18	AB9	B	133	137	Right-handed 310
Helix 19	AC1	B	141	145	Right-handed 310
Helix 20	AC2	B	149	159	Right-handed alpha
Helix 21	AC3	B	172	176	Right-handed 310
Helix 22	AC4	B	177	184	Right-handed alpha
Helix 23	AC5	B	196	206	Right-handed alpha
Helix 24	AC6	B	227	235	Right-handed alpha
Helix 25	AC7	B	250	262	Right-handed alpha
Helix 26	AC8	B	309	320	Right-handed alpha
Helix 27	AC9	B	324	331	Right-handed alpha
Helix 28	AD1	B	333	340	Right-handed alpha
Helix 29	AD2	C	35	37	Right-handed 310
Helix 30	AD3	C	73	86	Right-handed alpha
Helix 31	AD4	C	100	116	Right-handed alpha
Helix 32	AD5	C	141	145	Right-handed 310
Helix 33	AD6	C	149	159	Right-handed alpha
Helix 34	AD7	C	172	176	Right-handed 310
Helix 35	AD8	C	177	184	Right-handed alpha
Helix 36	AD9	C	196	206	Right-handed alpha
Helix 37	AE1	C	227	235	Right-handed alpha
Helix 38	AE2	C	250	262	Right-handed alpha
Helix 39	AE3	C	309	320	Right-handed alpha
Helix 40	AE4	C	324	333	Right-handed alpha
Helix 41	AE5	C	333	340	Right-handed alpha
Helix 42	AE6	D	35	37	Right-handed 310
Helix 43	AE7	D	73	86	Right-handed alpha
Helix 44	AE8	D	100	116	Right-handed alpha
Helix 45	AE9	D	133	137	Right-handed 310
Helix 46	AF1	D	141	145	Right-handed 310
Helix 47	AF2	D	149	159	Right-handed alpha
Helix 48	AF3	D	172	176	Right-handed 310
Helix 49	AF4	D	177	184	Right-handed alpha
Helix 50	AF5	D	196	207	Right-handed alpha
Helix 51	AF6	D	227	235	Right-handed alpha
Helix 52	AF7	D	250	262	Right-handed alpha
Helix 53	AF8	D	309	320	Right-handed alpha
Helix 54	AF9	D	324	333	Right-handed alpha
Helix 55	AG1	D	333	340	Right-handed alpha

There are 23 sheets in PDB entry 6JKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	33	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	2	5	anti-parallel
Strand 4	A	42	45	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	8	10	anti-parallel
Strand 3	A	50	53	parallel
Strand 4	A	357	360	anti-parallel
Strand 5	A	366	371	anti-parallel
Strand 6	A	374	377	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	89	97	parallel
Strand 3	A	125	128	parallel
Strand 4	A	163	168	parallel
Strand 5	A	187	190	parallel
Strand 6	A	210	211	parallel
Strand 7	A	239	243	parallel
Strand 8	A	265	268	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	66	67	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	A	295	297	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	33	first strand
Strand 2	B	15	24	anti-parallel
Strand 3	B	1	10	anti-parallel
Strand 4	B	43	45	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	33	first strand
Strand 2	B	15	24	anti-parallel
Strand 3	B	1	10	anti-parallel
Strand 4	B	50	53	parallel
Strand 5	B	357	360	anti-parallel
Strand 6	B	366	371	anti-parallel
Strand 7	B	374	377	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	89	97	parallel
Strand 3	B	125	128	parallel
Strand 4	B	163	168	parallel
Strand 5	B	187	190	parallel
Strand 6	B	210	211	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	66	67	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	265	268	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	303	306	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	33	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	1	5	anti-parallel
Strand 4	C	42	45	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	8	10	anti-parallel
Strand 3	C	50	53	parallel
Strand 4	C	357	360	anti-parallel
Strand 5	C	366	371	anti-parallel
Strand 6	C	374	377	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	89	97	parallel
Strand 3	C	125	128	parallel
Strand 4	C	163	168	parallel
Strand 5	C	187	190	parallel
Strand 6	C	210	211	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	66	67	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	265	268	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	284	first strand
Strand 2	C	287	292	anti-parallel
Strand 3	C	295	297	anti-parallel
Strand 4	C	303	306	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	33	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	1	5	anti-parallel
Strand 4	D	42	45	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	16	first strand
Strand 2	D	8	10	anti-parallel
Strand 3	D	50	53	parallel
Strand 4	D	357	360	anti-parallel
Strand 5	D	366	371	anti-parallel
Strand 6	D	374	377	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	89	97	parallel
Strand 3	D	125	128	parallel
Strand 4	D	163	168	parallel
Strand 5	D	187	190	parallel
Strand 6	D	210	211	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	66	67	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	243	first strand
Strand 2	D	265	268	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	284	first strand
Strand 2	D	287	292	anti-parallel
Strand 3	D	295	297	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JKU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKU