Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JKV entry

There are 2 chains in PDB entry 6JKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4PHE 242
B
 ASN 4PHE 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6JKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 34Right-handed 310
Helix 2
AA2
A
48 63Right-handed alpha
Helix 3
AA3
A
68 95Right-handed alpha
Helix 4
AA4
A
139 146Right-handed alpha
Helix 5
AA5
A
193 198Right-handed alpha
Helix 6
AA6
A
201 210Right-handed alpha
Helix 7
AA7
A
213 228Right-handed alpha
Helix 8
AA8
B
32 34Right-handed 310
Helix 9
AA9
B
48 63Right-handed alpha
Helix 10
AB1
B
68 95Right-handed alpha
Helix 11
AB2
B
139 145Right-handed alpha
Helix 12
AB3
B
193 198Right-handed alpha
Helix 13
AB4
B
201 210Right-handed alpha
Helix 14
AB5
B
213 228Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6JKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 16first strand
Strand 2
A
234 242anti-parallel
Strand 3
A
188 192anti-parallel
Strand 4
A
122 127anti-parallel
Strand 5
A
130 133anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
100 101anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
103 109anti-parallel
Strand 4
A
112 118anti-parallel
Strand 5
A
177 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 16first strand
Strand 2
B
234 242anti-parallel
Strand 3
B
188 192anti-parallel
Strand 4
B
122 127anti-parallel
Strand 5
B
130 133anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
100 101anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
103 109anti-parallel
Strand 4
B
112 118anti-parallel
Strand 5
B
177 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il