Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JKW entry

There are 8 chains in PDB entry 6JKW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLY 373
B	ALA 2	GLY 373
C	ALA 2	GLY 373
D	ALA 2	GLY 373
E	ALA 2	GLY 373
F	ALA 2	GLY 373
G	ALA 2	GLY 373
H	ALA 2	GLY 373

There are120 helices in PDB entry 6JKW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	76	Right-handed alpha
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	93	98	Right-handed alpha
Helix 4	AA4	A	99	109	Right-handed alpha
Helix 5	AA5	A	125	128	Right-handed 310
Helix 6	AA6	A	129	141	Right-handed alpha
Helix 7	AA7	A	141	152	Right-handed alpha
Helix 8	AA8	A	154	157	Right-handed 310
Helix 9	AA9	A	215	221	Right-handed alpha
Helix 10	AB1	A	234	243	Right-handed alpha
Helix 11	AB2	A	245	253	Right-handed alpha
Helix 12	AB3	A	259	271	Right-handed alpha
Helix 13	AB4	A	286	296	Right-handed alpha
Helix 14	AB5	A	350	355	Right-handed alpha
Helix 15	AB6	A	360	373	Right-handed alpha
Helix 16	AB7	B	70	76	Right-handed alpha
Helix 17	AB8	B	80	84	Right-handed 310
Helix 18	AB9	B	93	98	Right-handed alpha
Helix 19	AC1	B	99	109	Right-handed alpha
Helix 20	AC2	B	125	128	Right-handed 310
Helix 21	AC3	B	129	141	Right-handed alpha
Helix 22	AC4	B	141	152	Right-handed alpha
Helix 23	AC5	B	154	157	Right-handed 310
Helix 24	AC6	B	215	221	Right-handed alpha
Helix 25	AC7	B	234	243	Right-handed alpha
Helix 26	AC8	B	245	253	Right-handed alpha
Helix 27	AC9	B	259	271	Right-handed alpha
Helix 28	AD1	B	286	296	Right-handed alpha
Helix 29	AD2	B	350	355	Right-handed alpha
Helix 30	AD3	B	360	372	Right-handed alpha
Helix 31	AD4	C	70	76	Right-handed alpha
Helix 32	AD5	C	80	84	Right-handed 310
Helix 33	AD6	C	93	98	Right-handed alpha
Helix 34	AD7	C	99	110	Right-handed alpha
Helix 35	AD8	C	125	128	Right-handed 310
Helix 36	AD9	C	129	141	Right-handed alpha
Helix 37	AE1	C	141	152	Right-handed alpha
Helix 38	AE2	C	154	157	Right-handed 310
Helix 39	AE3	C	215	221	Right-handed alpha
Helix 40	AE4	C	234	243	Right-handed alpha
Helix 41	AE5	C	245	253	Right-handed alpha
Helix 42	AE6	C	259	271	Right-handed alpha
Helix 43	AE7	C	286	298	Right-handed alpha
Helix 44	AE8	C	350	356	Right-handed alpha
Helix 45	AE9	C	360	372	Right-handed alpha
Helix 46	AF1	D	70	75	Right-handed alpha
Helix 47	AF2	D	76	78	Right-handed 310
Helix 48	AF3	D	80	84	Right-handed 310
Helix 49	AF4	D	93	98	Right-handed alpha
Helix 50	AF5	D	99	110	Right-handed alpha
Helix 51	AF6	D	125	128	Right-handed 310
Helix 52	AF7	D	129	141	Right-handed alpha
Helix 53	AF8	D	141	152	Right-handed alpha
Helix 54	AF9	D	154	157	Right-handed 310
Helix 55	AG1	D	215	221	Right-handed alpha
Helix 56	AG2	D	234	243	Right-handed alpha
Helix 57	AG3	D	245	253	Right-handed alpha
Helix 58	AG4	D	259	271	Right-handed alpha
Helix 59	AG5	D	286	298	Right-handed alpha
Helix 60	AG6	D	350	356	Right-handed alpha
Helix 61	AG7	D	360	372	Right-handed alpha
Helix 62	AG8	E	70	76	Right-handed alpha
Helix 63	AG9	E	80	84	Right-handed 310
Helix 64	AH1	E	93	98	Right-handed alpha
Helix 65	AH2	E	99	111	Right-handed alpha
Helix 66	AH3	E	125	128	Right-handed 310
Helix 67	AH4	E	129	141	Right-handed alpha
Helix 68	AH5	E	141	151	Right-handed alpha
Helix 69	AH6	E	154	157	Right-handed 310
Helix 70	AH7	E	215	222	Right-handed alpha
Helix 71	AH8	E	234	243	Right-handed alpha
Helix 72	AH9	E	245	253	Right-handed alpha
Helix 73	AI1	E	259	271	Right-handed alpha
Helix 74	AI2	E	286	296	Right-handed alpha
Helix 75	AI3	E	350	355	Right-handed alpha
Helix 76	AI4	E	360	372	Right-handed alpha
Helix 77	AI5	F	69	76	Right-handed alpha
Helix 78	AI6	F	80	84	Right-handed 310
Helix 79	AI7	F	93	98	Right-handed alpha
Helix 80	AI8	F	99	111	Right-handed alpha
Helix 81	AI9	F	125	128	Right-handed 310
Helix 82	AJ1	F	129	141	Right-handed alpha
Helix 83	AJ2	F	141	152	Right-handed alpha
Helix 84	AJ3	F	154	157	Right-handed 310
Helix 85	AJ4	F	215	222	Right-handed alpha
Helix 86	AJ5	F	234	243	Right-handed alpha
Helix 87	AJ6	F	245	253	Right-handed alpha
Helix 88	AJ7	F	259	271	Right-handed alpha
Helix 89	AJ8	F	286	296	Right-handed alpha
Helix 90	AJ9	F	350	355	Right-handed alpha
Helix 91	AK1	F	364	372	Right-handed alpha
Helix 92	AK2	G	70	76	Right-handed alpha
Helix 93	AK3	G	80	84	Right-handed 310
Helix 94	AK4	G	93	98	Right-handed alpha
Helix 95	AK5	G	99	110	Right-handed alpha
Helix 96	AK6	G	125	128	Right-handed 310
Helix 97	AK7	G	129	141	Right-handed alpha
Helix 98	AK8	G	141	149	Right-handed alpha
Helix 99	AK9	G	154	157	Right-handed 310
Helix 100	AL1	G	215	222	Right-handed alpha
Helix 101	AL2	G	234	243	Right-handed alpha
Helix 102	AL3	G	245	253	Right-handed alpha
Helix 103	AL4	G	259	271	Right-handed alpha
Helix 104	AL5	G	286	296	Right-handed alpha
Helix 105	AL6	G	350	355	Right-handed alpha
Helix 106	AL7	G	364	373	Right-handed alpha
Helix 107	AL8	H	70	76	Right-handed alpha
Helix 108	AL9	H	80	84	Right-handed 310
Helix 109	AM1	H	93	98	Right-handed alpha
Helix 110	AM2	H	99	111	Right-handed alpha
Helix 111	AM3	H	125	128	Right-handed 310
Helix 112	AM4	H	129	141	Right-handed alpha
Helix 113	AM5	H	141	149	Right-handed alpha
Helix 114	AM6	H	215	222	Right-handed alpha
Helix 115	AM7	H	234	243	Right-handed alpha
Helix 116	AM8	H	245	253	Right-handed alpha
Helix 117	AM9	H	259	271	Right-handed alpha
Helix 118	AN1	H	286	296	Right-handed alpha
Helix 119	AN2	H	350	355	Right-handed alpha
Helix 120	AN3	H	364	373	Right-handed alpha

There are 16 sheets in PDB entry 6JKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	116	121	parallel
Strand 3	A	86	88	parallel
Strand 4	A	61	66	parallel
Strand 5	A	51	56	anti-parallel
Strand 6	A	31	37	anti-parallel
Strand 7	A	309	313	anti-parallel
Strand 8	A	318	322	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	176	first strand
Strand 2	A	179	185	anti-parallel
Strand 3	A	194	200	anti-parallel
Strand 4	A	203	207	anti-parallel
Strand 5	A	226	230	parallel
Strand 6	A	275	278	parallel
Strand 7	A	302	304	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	164	first strand
Strand 2	B	116	121	parallel
Strand 3	B	86	88	parallel
Strand 4	B	61	66	parallel
Strand 5	B	51	56	anti-parallel
Strand 6	B	31	37	anti-parallel
Strand 7	B	309	313	anti-parallel
Strand 8	B	318	322	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	179	185	anti-parallel
Strand 3	B	194	200	anti-parallel
Strand 4	B	203	207	anti-parallel
Strand 5	B	226	230	parallel
Strand 6	B	275	278	parallel
Strand 7	B	302	304	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	116	121	parallel
Strand 3	C	86	88	parallel
Strand 4	C	61	66	parallel
Strand 5	C	51	56	anti-parallel
Strand 6	C	31	37	anti-parallel
Strand 7	C	309	313	anti-parallel
Strand 8	C	318	322	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	176	first strand
Strand 2	C	179	185	anti-parallel
Strand 3	C	194	200	anti-parallel
Strand 4	C	203	207	anti-parallel
Strand 5	C	226	230	parallel
Strand 6	C	275	278	parallel
Strand 7	C	302	304	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	164	first strand
Strand 2	D	116	121	parallel
Strand 3	D	86	88	parallel
Strand 4	D	61	66	parallel
Strand 5	D	51	56	anti-parallel
Strand 6	D	31	37	anti-parallel
Strand 7	D	309	313	anti-parallel
Strand 8	D	318	322	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	176	first strand
Strand 2	D	179	185	anti-parallel
Strand 3	D	194	200	anti-parallel
Strand 4	D	203	207	anti-parallel
Strand 5	D	226	230	parallel
Strand 6	D	275	278	parallel
Strand 7	D	302	304	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	164	first strand
Strand 2	E	116	121	parallel
Strand 3	E	86	88	parallel
Strand 4	E	61	66	parallel
Strand 5	E	51	56	anti-parallel
Strand 6	E	31	37	anti-parallel
Strand 7	E	309	313	anti-parallel
Strand 8	E	318	322	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	176	first strand
Strand 2	E	179	185	anti-parallel
Strand 3	E	194	200	anti-parallel
Strand 4	E	203	207	anti-parallel
Strand 5	E	226	230	parallel
Strand 6	E	275	278	parallel
Strand 7	E	302	304	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	164	first strand
Strand 2	F	116	121	parallel
Strand 3	F	86	88	parallel
Strand 4	F	61	66	parallel
Strand 5	F	51	56	anti-parallel
Strand 6	F	31	37	anti-parallel
Strand 7	F	309	313	anti-parallel
Strand 8	F	318	322	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	176	first strand
Strand 2	F	179	185	anti-parallel
Strand 3	F	194	200	anti-parallel
Strand 4	F	203	207	anti-parallel
Strand 5	F	226	230	parallel
Strand 6	F	274	278	parallel
Strand 7	F	302	304	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	164	first strand
Strand 2	G	116	121	parallel
Strand 3	G	86	88	parallel
Strand 4	G	61	66	parallel
Strand 5	G	51	56	anti-parallel
Strand 6	G	31	37	anti-parallel
Strand 7	G	309	313	anti-parallel
Strand 8	G	318	322	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	176	first strand
Strand 2	G	179	185	anti-parallel
Strand 3	G	194	200	anti-parallel
Strand 4	G	203	207	anti-parallel
Strand 5	G	226	230	parallel
Strand 6	G	274	278	parallel
Strand 7	G	302	304	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	164	first strand
Strand 2	H	116	121	parallel
Strand 3	H	86	88	parallel
Strand 4	H	61	66	parallel
Strand 5	H	51	56	anti-parallel
Strand 6	H	31	37	anti-parallel
Strand 7	H	309	313	anti-parallel
Strand 8	H	318	322	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	171	176	first strand
Strand 2	H	179	185	anti-parallel
Strand 3	H	194	200	anti-parallel
Strand 4	H	203	207	anti-parallel
Strand 5	H	226	230	parallel
Strand 6	H	274	278	parallel
Strand 7	H	302	304	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JKW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKW