Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JKY entry

There are 6 chains in PDB entry 6JKY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 12	ILE 395
B	ALA 2	ASN 150
C	GLY -1	ARG 74
D	LEU 13	LEU 393
E	GLY 3	ASN 150
F	SER 0	ARG 74

There are 54 helices in PDB entry 6JKY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	32	Right-handed alpha
Helix 2	AA2	A	33	37	Right-handed 310
Helix 3	AA3	A	39	52	Right-handed alpha
Helix 4	AA4	A	60	73	Right-handed alpha
Helix 5	AA5	A	82	96	Right-handed alpha
Helix 6	AA6	A	96	106	Right-handed alpha
Helix 7	AA7	A	115	124	Right-handed alpha
Helix 8	AA8	A	151	155	Right-handed 310
Helix 9	AA9	A	187	199	Right-handed alpha
Helix 10	AB1	A	208	214	Right-handed alpha
Helix 11	AB2	A	217	233	Right-handed alpha
Helix 12	AB3	A	234	237	Right-handed 310
Helix 13	AB4	A	272	279	Right-handed alpha
Helix 14	AB5	A	280	287	Right-handed alpha
Helix 15	AB6	A	289	303	Right-handed alpha
Helix 16	AB7	A	305	318	Right-handed alpha
Helix 17	AB8	A	328	332	Right-handed 310
Helix 18	AB9	A	347	364	Right-handed alpha
Helix 19	AC1	A	369	393	Right-handed alpha
Helix 20	AC2	B	5	18	Right-handed alpha
Helix 21	AC3	B	100	114	Right-handed alpha
Helix 22	AC4	B	123	132	Right-handed alpha
Helix 23	AC5	B	132	148	Right-handed alpha
Helix 24	AC6	C	22	35	Right-handed alpha
Helix 25	AC7	C	37	41	Right-handed 310
Helix 26	AC8	C	56	60	Right-handed 310
Helix 27	AC9	D	15	32	Right-handed alpha
Helix 28	AD1	D	33	37	Right-handed 310
Helix 29	AD2	D	39	51	Right-handed alpha
Helix 30	AD3	D	52	55	Right-handed 310
Helix 31	AD4	D	62	77	Right-handed alpha
Helix 32	AD5	D	82	96	Right-handed alpha
Helix 33	AD6	D	96	105	Right-handed alpha
Helix 34	AD7	D	115	125	Right-handed alpha
Helix 35	AD8	D	151	155	Right-handed 310
Helix 36	AD9	D	187	197	Right-handed alpha
Helix 37	AE1	D	208	213	Right-handed alpha
Helix 38	AE2	D	217	233	Right-handed alpha
Helix 39	AE3	D	234	237	Right-handed 310
Helix 40	AE4	D	272	279	Right-handed alpha
Helix 41	AE5	D	280	286	Right-handed alpha
Helix 42	AE6	D	289	303	Right-handed alpha
Helix 43	AE7	D	305	318	Right-handed alpha
Helix 44	AE8	D	322	327	Right-handed alpha
Helix 45	AE9	D	328	332	Right-handed 310
Helix 46	AF1	D	347	364	Right-handed alpha
Helix 47	AF2	D	369	392	Right-handed alpha
Helix 48	AF3	E	5	18	Right-handed alpha
Helix 49	AF4	E	100	114	Right-handed alpha
Helix 50	AF5	E	123	132	Right-handed alpha
Helix 51	AF6	E	132	148	Right-handed alpha
Helix 52	AF7	F	22	35	Right-handed alpha
Helix 53	AF8	F	37	41	Right-handed 310
Helix 54	AF9	F	55	59	Right-handed 310

There are 8 sheets in PDB entry 6JKY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	337	345	anti-parallel
Strand 3	A	132	141	anti-parallel
Strand 4	A	240	250	anti-parallel
Strand 5	A	262	264	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	172	175	anti-parallel
Strand 3	A	164	167	anti-parallel
Strand 4	A	146	149	parallel
Strand 5	A	203	205	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	34	40	anti-parallel
Strand 3	B	51	57	anti-parallel
Strand 4	B	68	71	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	17	first strand
Strand 2	C	1	6	anti-parallel
Strand 3	C	66	70	parallel
Strand 4	C	42	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	337	345	anti-parallel
Strand 3	D	132	141	anti-parallel
Strand 4	D	240	250	anti-parallel
Strand 5	D	262	264	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	172	175	anti-parallel
Strand 3	D	164	167	anti-parallel
Strand 4	D	146	149	parallel
Strand 5	D	203	205	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	52	57	anti-parallel
Strand 4	E	68	71	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	17	first strand
Strand 2	F	1	6	anti-parallel
Strand 3	F	66	70	parallel
Strand 4	F	42	45	anti-parallel
Strand 5	F	48	50	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JKY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JKY