Analysis of interatomic Contacts of Structural Units in PDB entry:
6JL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JL1 entry

There is 1 chain in PDB entry 6JL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23HIS 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6JL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
30 40Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
157 163Right-handed alpha
Helix 5
AA5
A
183 192Right-handed alpha
Helix 6
AA6
A
206 210Right-handed 310
Helix 7
AA7
A
215 228Right-handed alpha
Helix 8
AA8
A
234 236Right-handed 310
Helix 9
AA9
A
245 251Right-handed alpha
Helix 10
AB1
A
255 273Right-handed alpha
Helix 11
AB2
A
285 295Right-handed 310
Helix 12
AB3
A
296 325Right-handed alpha
Helix 13
AB4
A
332 343Right-handed alpha
Helix 14
AB5
A
344 348Right-handed 310
Helix 15
AB6
A
363 369Right-handed 310
Helix 16
AB7
A
374 381Right-handed alpha
Helix 17
AB8
A
394 407Right-handed alpha
Helix 18
AB9
A
411 415Right-handed 310
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There are 4 sheets in PDB entry 6JL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
42 51anti-parallel
Strand 3
A
117 121anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
42 51anti-parallel
Strand 3
A
75 81anti-parallel
Strand 4
A
89 92anti-parallel
Strand 5
A
131 133parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
145 149parallel
Strand 3
A
238 242parallel
Strand 4
A
277 281parallel
Strand 5
A
327 331parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 355first strand
Strand 2
A
385 387parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il