Analysis of interatomic Contacts of Structural Units in PDB entry:
6JL2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JL2 entry

There are 3 chains in PDB entry 6JL2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23HIS 423
B
 SER 25HIS 418
C
 SER 25HIS 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6JL2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
30 40Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
157 163Right-handed alpha
Helix 6
AA6
A
183 193Right-handed alpha
Helix 7
AA7
A
206 210Right-handed 310
Helix 8
AA8
A
215 228Right-handed alpha
Helix 9
AA9
A
234 236Right-handed 310
Helix 10
AB1
A
245 252Right-handed alpha
Helix 11
AB2
A
255 273Right-handed alpha
Helix 12
AB3
A
285 293Right-handed 310
Helix 13
AB4
A
296 324Right-handed alpha
Helix 14
AB5
A
332 343Right-handed alpha
Helix 15
AB6
A
344 348Right-handed 310
Helix 16
AB7
A
364 369Right-handed alpha
Helix 17
AB8
A
374 381Right-handed alpha
Helix 18
AB9
A
394 406Right-handed alpha
Helix 19
AC1
A
411 415Right-handed 310
Helix 20
AC2
B
25 29Right-handed 310
Helix 21
AC3
B
30 40Right-handed alpha
Helix 22
AC4
B
95 108Right-handed alpha
Helix 23
AC5
B
157 163Right-handed alpha
Helix 24
AC6
B
183 193Right-handed alpha
Helix 25
AC7
B
206 210Right-handed 310
Helix 26
AC8
B
215 229Right-handed alpha
Helix 27
AC9
B
234 236Right-handed 310
Helix 28
AD1
B
245 252Right-handed alpha
Helix 29
AD2
B
255 273Right-handed alpha
Helix 30
AD3
B
285 293Right-handed 310
Helix 31
AD4
B
296 323Right-handed alpha
Helix 32
AD5
B
332 343Right-handed alpha
Helix 33
AD6
B
344 348Right-handed 310
Helix 34
AD7
B
374 381Right-handed alpha
Helix 35
AD8
B
394 406Right-handed alpha
Helix 36
AD9
B
411 415Right-handed 310
Helix 37
AE1
C
25 29Right-handed 310
Helix 38
AE2
C
30 40Right-handed alpha
Helix 39
AE3
C
95 108Right-handed alpha
Helix 40
AE4
C
157 163Right-handed alpha
Helix 41
AE5
C
183 193Right-handed alpha
Helix 42
AE6
C
206 210Right-handed 310
Helix 43
AE7
C
215 228Right-handed alpha
Helix 44
AE8
C
234 236Right-handed 310
Helix 45
AE9
C
245 252Right-handed alpha
Helix 46
AF1
C
255 273Right-handed alpha
Helix 47
AF2
C
285 293Right-handed 310
Helix 48
AF3
C
296 323Right-handed alpha
Helix 49
AF4
C
332 343Right-handed alpha
Helix 50
AF5
C
344 348Right-handed 310
Helix 51
AF6
C
374 381Right-handed alpha
Helix 52
AF7
C
394 406Right-handed alpha
Helix 53
AF8
C
411 415Right-handed 310
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There are 12 sheets in PDB entry 6JL2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
42 51anti-parallel
Strand 3
A
117 121anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
42 51anti-parallel
Strand 3
A
75 81anti-parallel
Strand 4
A
89 92anti-parallel
Strand 5
A
131 133parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
145 149parallel
Strand 3
A
238 242parallel
Strand 4
A
277 281parallel
Strand 5
A
327 331parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 355first strand
Strand 2
A
385 387parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
42 51anti-parallel
Strand 3
B
117 121anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
42 51anti-parallel
Strand 3
B
75 81anti-parallel
Strand 4
B
89 92anti-parallel
Strand 5
B
131 133parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
145 150parallel
Strand 3
B
238 243parallel
Strand 4
B
277 281parallel
Strand 5
B
327 331parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 355first strand
Strand 2
B
385 387parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 65first strand
Strand 2
C
42 51anti-parallel
Strand 3
C
117 121anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 65first strand
Strand 2
C
42 51anti-parallel
Strand 3
C
75 80anti-parallel
Strand 4
C
89 92anti-parallel
Strand 5
C
130 133parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 198first strand
Strand 2
C
145 150parallel
Strand 3
C
238 243parallel
Strand 4
C
277 281parallel
Strand 5
C
327 331parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
351 355first strand
Strand 2
C
385 387parallel
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