Analysis of interatomic Contacts of Structural Units in PDB entry:
6JL8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JL8 entry

There are 2 chains in PDB entry 6JL8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 3	SER 483
B	PHE 3	GLU 482

There are 37 helices in PDB entry 6JL8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	16	Right-handed 310
Helix 2	AA2	A	59	69	Right-handed alpha
Helix 3	AA3	A	80	93	Right-handed alpha
Helix 4	AA4	A	110	120	Right-handed alpha
Helix 5	AA5	A	147	151	Right-handed alpha
Helix 6	AA6	A	158	163	Right-handed alpha
Helix 7	AA7	A	167	169	Right-handed 310
Helix 8	AA8	A	178	189	Right-handed alpha
Helix 9	AA9	A	209	217	Right-handed alpha
Helix 10	AB1	A	238	251	Right-handed alpha
Helix 11	AB2	A	265	278	Right-handed alpha
Helix 12	AB3	A	293	304	Right-handed alpha
Helix 13	AB4	A	319	325	Right-handed alpha
Helix 14	AB5	A	329	343	Right-handed alpha
Helix 15	AB6	A	356	366	Right-handed alpha
Helix 16	AB7	A	439	458	Right-handed alpha
Helix 17	AB8	A	462	470	Right-handed alpha
Helix 18	AB9	A	476	482	Right-handed alpha
Helix 19	AC1	B	4	8	Right-handed 310
Helix 20	AC2	B	14	16	Right-handed 310
Helix 21	AC3	B	59	69	Right-handed alpha
Helix 22	AC4	B	80	94	Right-handed alpha
Helix 23	AC5	B	110	118	Right-handed alpha
Helix 24	AC6	B	148	151	Right-handed 310
Helix 25	AC7	B	158	163	Right-handed alpha
Helix 26	AC8	B	167	169	Right-handed 310
Helix 27	AC9	B	178	189	Right-handed alpha
Helix 28	AD1	B	209	218	Right-handed alpha
Helix 29	AD2	B	239	252	Right-handed alpha
Helix 30	AD3	B	265	278	Right-handed alpha
Helix 31	AD4	B	293	303	Right-handed alpha
Helix 32	AD5	B	319	324	Right-handed alpha
Helix 33	AD6	B	329	344	Right-handed alpha
Helix 34	AD7	B	356	366	Right-handed alpha
Helix 35	AD8	B	439	458	Right-handed alpha
Helix 36	AD9	B	462	470	Right-handed alpha
Helix 37	AE1	B	476	481	Right-handed alpha

There are 12 sheets in PDB entry 6JL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	472	474	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	43	45	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	72	75	parallel
Strand 3	A	232	235	parallel
Strand 4	A	255	259	parallel
Strand 5	A	285	291	parallel
Strand 6	A	307	310	parallel
Strand 7	A	348	351	parallel
Strand 8	A	370	373	parallel
Strand 9	A	49	51	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	193	197	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	129	133	parallel
Strand 3	A	141	146	anti-parallel
Strand 4	A	164	165	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	390	first strand
Strand 2	A	393	398	anti-parallel
Strand 3	A	432	435	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	472	474	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	43	45	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	72	75	parallel
Strand 3	B	232	235	parallel
Strand 4	B	255	259	parallel
Strand 5	B	285	291	parallel
Strand 6	B	307	310	parallel
Strand 7	B	348	351	parallel
Strand 8	B	370	373	parallel
Strand 9	B	49	51	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	129	133	parallel
Strand 3	B	141	146	anti-parallel
Strand 4	B	164	165	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	203	208	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	433	435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JL8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JL8