Analysis of interatomic Contacts of Structural Units in PDB entry:
6JLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JLD entry

There are 4 chains in PDB entry 6JLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 39SER 223
B
 PRO 39ASP 221
C
 PRO 39CYS 222
D
 PRO 39GLU 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6JLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
200 205Right-handed 310
Helix 2
AA2
A
207 211Right-handed 310
Helix 3
AA3
B
200 205Right-handed 310
Helix 4
AA4
B
207 213Right-handed 310
Helix 5
AA5
C
200 205Right-handed 310
Helix 6
AA6
C
207 212Right-handed 310
Helix 7
AA7
D
200 205Right-handed 310
Helix 8
AA8
D
207 213Right-handed 310
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There are 4 sheets in PDB entry 6JLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
102 107anti-parallel
Strand 3
A
92 97anti-parallel
Strand 4
A
75 80anti-parallel
Strand 5
A
62 70anti-parallel
Strand 6
A
47 56anti-parallel
Strand 7
A
184 196anti-parallel
Strand 8
A
174 181anti-parallel
Strand 9
A
163 168anti-parallel
Strand 10
A
146 152anti-parallel
Strand 11
A
132 139anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
102 107anti-parallel
Strand 3
B
92 97anti-parallel
Strand 4
B
75 81anti-parallel
Strand 5
B
62 70anti-parallel
Strand 6
B
47 56anti-parallel
Strand 7
B
184 196anti-parallel
Strand 8
B
174 181anti-parallel
Strand 9
B
163 168anti-parallel
Strand 10
B
144 152anti-parallel
Strand 11
B
132 141anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 117first strand
Strand 2
C
102 107anti-parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
75 81anti-parallel
Strand 5
C
62 70anti-parallel
Strand 6
C
47 56anti-parallel
Strand 7
C
184 196anti-parallel
Strand 8
C
174 181anti-parallel
Strand 9
C
163 168anti-parallel
Strand 10
C
144 152anti-parallel
Strand 11
C
132 141anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 117first strand
Strand 2
D
102 107anti-parallel
Strand 3
D
92 97anti-parallel
Strand 4
D
75 80anti-parallel
Strand 5
D
62 70anti-parallel
Strand 6
D
47 56anti-parallel
Strand 7
D
184 196anti-parallel
Strand 8
D
174 181anti-parallel
Strand 9
D
163 168anti-parallel
Strand 10
D
144 152anti-parallel
Strand 11
D
132 141anti-parallel
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