Analysis of interatomic Contacts of Structural Units in PDB entry:
6JLQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JLQ entry

There are 3 chains in PDB entry 6JLQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 35	GLU 366
B	ARG 13	MET 559
C	ASN 11	ASN 568

There are 23 helices in PDB entry 6JLQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	55	Right-handed alpha
Helix 2	AA2	A	56	63	Right-handed alpha
Helix 3	AA3	A	78	88	Right-handed alpha
Helix 4	AA4	A	99	110	Right-handed alpha
Helix 5	AA5	A	111	114	Right-handed 310
Helix 6	AA6	A	120	140	Right-handed alpha
Helix 7	AA7	A	166	173	Right-handed alpha
Helix 8	AA8	A	208	216	Right-handed alpha
Helix 9	AA9	A	222	226	Right-handed 310
Helix 10	AB1	A	336	344	Right-handed 310
Helix 11	AB2	B	146	151	Right-handed alpha
Helix 12	AB3	B	327	330	Right-handed 310
Helix 13	AB4	B	402	410	Right-handed alpha
Helix 14	AB5	B	445	449	Right-handed alpha
Helix 15	AB6	B	462	471	Right-handed alpha
Helix 16	AB7	B	474	478	Right-handed 310
Helix 17	AB8	B	531	534	Right-handed 310
Helix 18	AB9	B	535	546	Right-handed alpha
Helix 19	AC1	B	547	555	Right-handed alpha
Helix 20	AC2	C	28	31	Right-handed 310
Helix 21	AC3	C	314	317	Right-handed 310
Helix 22	AC4	C	384	389	Right-handed alpha
Helix 23	AC5	C	516	520	Right-handed 310

There are 24 sheets in PDB entry 6JLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	174	182	anti-parallel
Strand 3	A	192	195	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	174	182	anti-parallel
Strand 3	A	238	246	anti-parallel
Strand 4	A	218	221	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	250	255	parallel
Strand 3	A	356	364	anti-parallel
Strand 4	A	296	306	anti-parallel
Strand 5	A	279	280	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	250	255	parallel
Strand 3	A	356	364	anti-parallel
Strand 4	A	296	306	anti-parallel
Strand 5	A	312	319	anti-parallel
Strand 6	A	324	328	anti-parallel
Strand 7	A	331	335	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	274	275	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	234	236	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	268	269	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	B	429	433	anti-parallel
Strand 3	B	15	21	anti-parallel
Strand 4	B	514	519	anti-parallel
Strand 5	B	524	529	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	39	first strand
Strand 2	B	44	49	anti-parallel
Strand 3	B	53	58	anti-parallel
Strand 4	B	69	72	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	84	first strand
Strand 2	B	89	94	anti-parallel
Strand 3	B	99	103	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	126	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	162	164	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	192	196	anti-parallel
Strand 4	B	201	206	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	224	229	anti-parallel
Strand 3	B	234	238	anti-parallel
Strand 4	B	243	248	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	275	280	anti-parallel
Strand 4	B	287	292	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	302	first strand
Strand 2	B	311	316	anti-parallel
Strand 3	B	321	325	anti-parallel
Strand 4	B	355	357	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	368	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	384	388	anti-parallel
Strand 4	B	393	397	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	459	461	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	23	26	anti-parallel
Strand 3	C	555	559	anti-parallel
Strand 4	C	545	550	anti-parallel
Strand 5	C	536	541	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	54	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	72	77	anti-parallel
Strand 4	C	92	95	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	111	first strand
Strand 2	C	116	122	anti-parallel
Strand 3	C	127	130	anti-parallel
Strand 4	C	138	141	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	157	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	173	178	anti-parallel
Strand 4	C	214	218	anti-parallel
Strand 5	C	199	204	anti-parallel
Strand 6	C	190	196	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	228	first strand
Strand 2	C	234	239	anti-parallel
Strand 3	C	243	248	anti-parallel
Strand 4	C	253	259	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	276	281	anti-parallel
Strand 3	C	285	290	anti-parallel
Strand 4	C	295	301	anti-parallel
Strand 5	C	522	523	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	312	first strand
Strand 2	C	367	373	anti-parallel
Strand 3	C	377	383	anti-parallel
Strand 4	C	527	530	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JLQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JLQ