Analysis of interatomic Contacts of Structural Units in PDB entry:
6JM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JM5 entry

There are 2 chains in PDB entry 6JM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 18SER 140
B
 VAL 19GLU 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6JM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
119 135Right-handed alpha
Helix 3
AA3
B
22 27Right-handed alpha
Helix 4
AA4
B
119 135Right-handed alpha
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There are 2 sheets in PDB entry 6JM5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
70 78anti-parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
A
33 40anti-parallel
Strand 6
A
106 116anti-parallel
Strand 7
A
91 103anti-parallel
Strand 8
A
82 88anti-parallel
Strand 9
B
136 137parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
B
82 88parallel
Strand 3
B
91 103anti-parallel
Strand 4
B
106 116anti-parallel
Strand 5
B
33 40anti-parallel
Strand 6
B
46 53anti-parallel
Strand 7
B
57 63anti-parallel
Strand 8
B
70 78anti-parallel
Strand 9
B
20 21anti-parallel
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