Analysis of interatomic Contacts of Structural Units in PDB entry:
6JM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JM7 entry

There is 1 chain in PDB entry 6JM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23GLU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6JM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
38 42Right-handed 310
Helix 3
AA3
A
44 48Right-handed 310
Helix 4
AA4
A
73 78Right-handed alpha
Helix 5
AA5
A
81 88Right-handed alpha
Helix 6
AA6
A
89 92Right-handed 310
Helix 7
AA7
A
109 118Right-handed alpha
Helix 8
AA8
A
118 136Right-handed alpha
Helix 9
AA9
A
157 175Right-handed alpha
Helix 10
AB1
A
188 196Right-handed alpha
Helix 11
AB2
A
197 205Right-handed alpha
Helix 12
AB3
A
239 243Right-handed 310
Helix 13
AB4
A
245 256Right-handed alpha
Helix 14
AB5
A
259 261Right-handed 310
Helix 15
AB6
A
306 316Right-handed alpha
Helix 16
AB7
A
343 357Right-handed alpha
Helix 17
AB8
A
366 370Right-handed 310
Helix 18
AB9
A
381 394Right-handed alpha
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There are 3 sheets in PDB entry 6JM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
55 63anti-parallel
Strand 3
A
97 103parallel
Strand 4
A
140 144parallel
Strand 5
A
180 185parallel
Strand 6
A
207 210parallel
Strand 7
A
263 268parallel
Strand 8
A
361 365parallel
Strand 9
A
25 31parallel
Strand 10
A
55 63parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
303 305anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
337 340anti-parallel
Strand 4
A
329 334anti-parallel
Strand 5
A
320 324anti-parallel
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