Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JMG entry

There are 2 chains in PDB entry 6JMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 14HIS 280
B
 ALA 14HIS 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6JMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 39Right-handed alpha
Helix 2
AA2
A
75 77Right-handed 310
Helix 3
AA3
A
78 83Right-handed alpha
Helix 4
AA4
A
84 86Right-handed 310
Helix 5
AA5
A
100 106Right-handed alpha
Helix 6
AA6
A
106 118Right-handed alpha
Helix 7
AA7
A
123 127Right-handed 310
Helix 8
AA8
A
145 155Right-handed alpha
Helix 9
AA9
A
170 188Right-handed alpha
Helix 10
AB1
A
195 199Right-handed 310
Helix 11
AB2
A
202 214Right-handed alpha
Helix 12
AB3
A
217 223Right-handed alpha
Helix 13
AB4
A
229 245Right-handed alpha
Helix 14
AB5
A
253 279Right-handed alpha
Helix 15
AB6
B
28 39Right-handed alpha
Helix 16
AB7
B
75 77Right-handed 310
Helix 17
AB8
B
78 83Right-handed alpha
Helix 18
AB9
B
84 86Right-handed 310
Helix 19
AC1
B
100 106Right-handed alpha
Helix 20
AC2
B
106 119Right-handed alpha
Helix 21
AC3
B
123 127Right-handed 310
Helix 22
AC4
B
145 155Right-handed alpha
Helix 23
AC5
B
170 188Right-handed alpha
Helix 24
AC6
B
202 214Right-handed alpha
Helix 25
AC7
B
217 223Right-handed alpha
Helix 26
AC8
B
229 245Right-handed alpha
Helix 27
AC9
B
253 276Right-handed alpha
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There are 2 sheets in PDB entry 6JMG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 60first strand
Strand 2
A
63 72anti-parallel
Strand 3
A
15 22parallel
Strand 4
A
91 97parallel
Strand 5
A
128 134parallel
Strand 6
A
159 163parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 60first strand
Strand 2
B
63 72anti-parallel
Strand 3
B
15 22parallel
Strand 4
B
91 97parallel
Strand 5
B
128 134parallel
Strand 6
B
159 163parallel
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