Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JMN entry

There is 1 chain in PDB entry 6JMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18ALA 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6JMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed alpha
Helix 2
AA2
A
160 163Right-handed 310
Helix 3
AA3
A
168 172Right-handed 310
Helix 4
AA4
A
173 177Right-handed 310
Helix 5
AA5
A
194 200Right-handed 310
Helix 6
AA6
A
202 211Right-handed alpha
Helix 7
AA7
A
223 229Right-handed alpha
Helix 8
AA8
A
243 256Right-handed alpha
Helix 9
AA9
A
271 278Right-handed 310
Helix 10
AB1
A
279 297Right-handed alpha
Helix 11
AB2
A
323 347Right-handed alpha
Helix 12
AB3
A
359 364Right-handed alpha
Helix 13
AB4
A
367 372Right-handed alpha
Helix 14
AB5
A
403 407Right-handed 310
Helix 15
AB6
A
412 423Right-handed alpha
Helix 16
AB7
A
426 428Right-handed 310
Helix 17
AB8
A
451 455Right-handed 310
Helix 18
AB9
A
472 481Right-handed alpha
Helix 19
AC1
A
510 524Right-handed alpha
Helix 20
AC2
A
533 537Right-handed 310
Helix 21
AC3
A
539 550Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6JMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
90 95anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
119 124parallel
Strand 3
A
99 108anti-parallel
Strand 4
A
70 75anti-parallel
Strand 5
A
78 83anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
119 124parallel
Strand 3
A
99 108anti-parallel
Strand 4
A
113 115anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
48 50anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 158first strand
Strand 2
A
179 185parallel
Strand 3
A
260 266parallel
Strand 4
A
302 306parallel
Strand 5
A
351 357parallel
Strand 6
A
377 381parallel
Strand 7
A
430 435parallel
Strand 8
A
528 532parallel
Strand 9
A
152 158parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
437 442anti-parallel
Strand 3
A
469 471anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
437 442anti-parallel
Strand 3
A
505 507anti-parallel
Strand 4
A
494 498anti-parallel
Strand 5
A
485 489anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il