Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JMP entry

There is 1 chain in PDB entry 6JMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6JMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 13Right-handed alpha
Helix 2
AA2
A
16 21Right-handed alpha
Helix 3
AA3
A
79 84Right-handed alpha
Helix 4
AA4
A
119 136Right-handed alpha
Helix 5
AA5
A
157 166Right-handed alpha
Helix 6
AA6
A
169 174Right-handed alpha
Helix 7
AA7
A
179 185Right-handed alpha
Helix 8
AA8
A
209 214Right-handed 310
Helix 9
AA9
A
219 226Right-handed alpha
Helix 10
AB1
A
258 268Right-handed alpha
Helix 11
AB2
A
273 282Right-handed alpha
Helix 12
AB3
A
307 314Right-handed alpha
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There are 6 sheets in PDB entry 6JMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
342 357parallel
Strand 3
A
42 57anti-parallel
Strand 4
A
32 38anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
325 333anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
75 77anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 304first strand
Strand 2
A
283 290anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
189 204anti-parallel
Strand 5
A
97 102anti-parallel
Strand 6
A
112 115anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
234 252anti-parallel
Strand 3
A
189 204anti-parallel
Strand 4
A
147 154anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 412first strand
Strand 2
A
359 367anti-parallel
Strand 3
A
448 455parallel
Strand 4
A
460 467anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 394first strand
Strand 2
A
371 382anti-parallel
Strand 3
A
416 429anti-parallel
Strand 4
A
432 443anti-parallel
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