Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JMR entry

There are 5 chains in PDB entry 6JMR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLN 1	ASP 220
F	ASP 1	GLU 218
B	CYS 210	ALA 630
C	GLN 1	ASP 219
D	ASP 1	GLU 219

There are 23 helices in PDB entry 6JMR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	28	32	Right-handed 310
Helix 2	AA2	E	86	90	Right-handed 310
Helix 3	AA3	F	129	132	Right-handed 310
Helix 4	AA4	F	188	193	Right-handed alpha
Helix 5	AA5	B	229	234	Right-handed alpha
Helix 6	AA6	B	240	244	Right-handed 310
Helix 7	AA7	B	246	252	Right-handed alpha
Helix 8	AA8	B	286	298	Right-handed alpha
Helix 9	AA9	B	322	340	Right-handed alpha
Helix 10	AB1	B	355	370	Right-handed alpha
Helix 11	AB2	B	384	389	Right-handed alpha
Helix 12	AB3	B	414	426	Right-handed alpha
Helix 13	AB4	B	453	460	Right-handed alpha
Helix 14	AB5	B	492	496	Right-handed 310
Helix 15	AB6	B	508	513	Right-handed alpha
Helix 16	AB7	B	519	524	Right-handed alpha
Helix 17	AB8	B	526	533	Right-handed alpha
Helix 18	AB9	B	533	539	Right-handed alpha
Helix 19	AC1	C	28	32	Right-handed 310
Helix 20	AC2	C	63	67	Right-handed 310
Helix 21	AC3	C	86	90	Right-handed 310
Helix 22	AC4	D	127	133	Right-handed alpha
Helix 23	AC5	D	189	194	Right-handed alpha

There are 27 sheets in PDB entry 6JMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	20	23	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	105	108	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	180	190	anti-parallel
Strand 4	E	169	171	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	180	190	anti-parallel
Strand 4	E	175	177	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	160	first strand
Strand 2	E	199	205	anti-parallel
Strand 3	E	210	216	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	76	81	anti-parallel
Strand 4	F	68	70	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	106	110	parallel
Strand 3	F	91	96	anti-parallel
Strand 4	F	39	44	anti-parallel
Strand 5	F	51	55	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	138	144	anti-parallel
Strand 3	F	178	184	anti-parallel
Strand 4	F	164	167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	186	187	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	160	first strand
Strand 2	F	150	155	anti-parallel
Strand 3	F	196	202	anti-parallel
Strand 4	F	212	215	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	304	307	parallel
Strand 3	B	345	346	parallel
Strand 4	B	376	379	parallel
Strand 5	B	400	401	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	275	280	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	433	first strand
Strand 2	B	462	464	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	542	first strand
Strand 2	B	552	556	anti-parallel
Strand 3	B	562	566	anti-parallel
Strand 4	B	622	626	anti-parallel
Strand 5	B	597	598	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	593	first strand
Strand 2	B	609	610	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	22	25	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	50	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	81	82	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	140	150	anti-parallel
Strand 3	C	179	183	anti-parallel
Strand 4	C	174	176	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	140	150	anti-parallel
Strand 3	C	186	189	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	199	204	anti-parallel
Strand 3	C	209	214	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	20	25	anti-parallel
Strand 3	D	76	80	anti-parallel
Strand 4	D	71	73	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	109	113	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	39	44	anti-parallel
Strand 3	D	91	96	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	135	145	anti-parallel
Strand 3	D	179	188	anti-parallel
Strand 4	D	165	169	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	151	156	anti-parallel
Strand 3	D	197	203	anti-parallel
Strand 4	D	211	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JMR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMR