Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JMS entry

There is 1 chain in PDB entry 6JMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1ASN 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6JMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 27Right-handed alpha
Helix 2
AA2
A
38 45Right-handed alpha
Helix 3
AA3
A
57 59Right-handed 310
Helix 4
AA4
A
60 67Right-handed alpha
Helix 5
AA5
A
67 79Right-handed alpha
Helix 6
AA6
A
80 83Right-handed 310
Helix 7
AA7
A
100 108Right-handed 310
Helix 8
AA8
A
109 124Right-handed alpha
Helix 9
AA9
A
139 141Right-handed 310
Helix 10
AB1
A
146 150Right-handed 310
Helix 11
AB2
A
153 155Right-handed 310
Helix 12
AB3
A
156 171Right-handed alpha
Helix 13
AB4
A
179 187Right-handed alpha
Helix 14
AB5
A
191 197Right-handed alpha
Helix 15
AB6
A
212 228Right-handed alpha
Helix 16
AB7
A
251 268Right-handed alpha
Helix 17
AB8
A
296 301Right-handed 310
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There are 3 sheets in PDB entry 6JMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
29 34parallel
Strand 3
A
51 56parallel
Strand 4
A
87 95parallel
Strand 5
A
131 137parallel
Strand 6
A
174 177parallel
Strand 7
A
235 240parallel
Strand 8
A
282 284parallel
Strand 9
A
3 6parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
208 210anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
275 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il