Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JMT entry

There are 4 chains in PDB entry 6JMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	GLN 358
D	ARG 6	GLY 359
B	ARG 6	GLN 358
C	SER 7	THR 301

There are119 helices in PDB entry 6JMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed 310
Helix 2	AA2	A	31	42	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	71	77	Right-handed alpha
Helix 5	AA5	A	101	112	Right-handed alpha
Helix 6	AA6	A	126	141	Right-handed alpha
Helix 7	AA7	A	145	156	Right-handed alpha
Helix 8	AA8	A	169	177	Right-handed alpha
Helix 9	AA9	A	179	189	Right-handed alpha
Helix 10	AB1	A	202	210	Right-handed alpha
Helix 11	AB2	A	212	224	Right-handed alpha
Helix 12	AB3	A	224	236	Right-handed alpha
Helix 13	AB4	A	240	244	Right-handed 310
Helix 14	AB5	A	260	272	Right-handed alpha
Helix 15	AB6	A	274	302	Right-handed alpha
Helix 16	AB7	A	303	309	Right-handed alpha
Helix 17	AB8	A	324	334	Right-handed alpha
Helix 18	AB9	A	335	337	Right-handed 310
Helix 19	AC1	A	338	358	Right-handed alpha
Helix 20	AC2	D	6	10	Right-handed 310
Helix 21	AC3	D	31	42	Right-handed alpha
Helix 22	AC4	D	57	69	Right-handed alpha
Helix 23	AC5	D	71	77	Right-handed alpha
Helix 24	AC6	D	77	82	Right-handed alpha
Helix 25	AC7	D	101	112	Right-handed alpha
Helix 26	AC8	D	126	141	Right-handed alpha
Helix 27	AC9	D	145	156	Right-handed alpha
Helix 28	AD1	D	169	177	Right-handed alpha
Helix 29	AD2	D	179	189	Right-handed alpha
Helix 30	AD3	D	202	210	Right-handed alpha
Helix 31	AD4	D	212	224	Right-handed alpha
Helix 32	AD5	D	224	236	Right-handed alpha
Helix 33	AD6	D	260	272	Right-handed alpha
Helix 34	AD7	D	274	302	Right-handed alpha
Helix 35	AD8	D	303	309	Right-handed alpha
Helix 36	AD9	D	324	334	Right-handed alpha
Helix 37	AE1	D	335	337	Right-handed 310
Helix 38	AE2	D	338	358	Right-handed alpha
Helix 39	AE3	B	6	10	Right-handed 310
Helix 40	AE4	B	31	42	Right-handed alpha
Helix 41	AE5	B	57	70	Right-handed alpha
Helix 42	AE6	B	71	77	Right-handed alpha
Helix 43	AE7	B	77	82	Right-handed alpha
Helix 44	AE8	B	83	86	Right-handed 310
Helix 45	AE9	B	101	112	Right-handed alpha
Helix 46	AF1	B	126	141	Right-handed alpha
Helix 47	AF2	B	145	155	Right-handed alpha
Helix 48	AF3	B	169	177	Right-handed alpha
Helix 49	AF4	B	179	189	Right-handed alpha
Helix 50	AF5	B	202	210	Right-handed alpha
Helix 51	AF6	B	212	224	Right-handed alpha
Helix 52	AF7	B	224	236	Right-handed alpha
Helix 53	AF8	B	260	272	Right-handed alpha
Helix 54	AF9	B	274	302	Right-handed alpha
Helix 55	AG1	B	303	308	Right-handed alpha
Helix 56	AG2	B	324	334	Right-handed alpha
Helix 57	AG3	B	335	337	Right-handed 310
Helix 58	AG4	B	338	356	Right-handed alpha
Helix 59	AG5	C	31	42	Right-handed alpha
Helix 60	AG6	C	57	70	Right-handed alpha
Helix 61	AG7	C	72	77	Right-handed alpha
Helix 62	AG8	C	77	82	Right-handed alpha
Helix 63	AG9	C	101	112	Right-handed alpha
Helix 64	AH1	C	128	141	Right-handed alpha
Helix 65	AH2	C	145	156	Right-handed alpha
Helix 66	AH3	C	169	178	Right-handed alpha
Helix 67	AH4	C	179	189	Right-handed alpha
Helix 68	AH5	C	202	210	Right-handed alpha
Helix 69	AH6	C	212	224	Right-handed alpha
Helix 70	AH7	C	224	236	Right-handed alpha
Helix 71	AH8	C	260	272	Right-handed alpha
Helix 72	AH9	C	274	302	Right-handed alpha
Helix 73	AI1	C	324	334	Right-handed alpha
Helix 74	AI2	C	335	337	Right-handed 310
Helix 75	AI3	C	338	358	Right-handed alpha
Helix 76	AI4	E	6	10	Right-handed 310
Helix 77	AI5	E	25	27	Right-handed 310
Helix 78	AI6	E	31	42	Right-handed alpha
Helix 79	AI7	E	57	69	Right-handed alpha
Helix 80	AI8	E	71	77	Right-handed alpha
Helix 81	AI9	E	77	82	Right-handed alpha
Helix 82	AJ1	E	83	86	Right-handed 310
Helix 83	AJ2	E	101	112	Right-handed alpha
Helix 84	AJ3	E	128	141	Right-handed alpha
Helix 85	AJ4	E	145	156	Right-handed alpha
Helix 86	AJ5	E	169	178	Right-handed alpha
Helix 87	AJ6	E	179	189	Right-handed alpha
Helix 88	AJ7	E	202	210	Right-handed alpha
Helix 89	AJ8	E	212	224	Right-handed alpha
Helix 90	AJ9	E	224	236	Right-handed alpha
Helix 91	AK1	E	260	272	Right-handed alpha
Helix 92	AK2	E	274	302	Right-handed alpha
Helix 93	AK3	E	324	334	Right-handed alpha
Helix 94	AK4	E	335	337	Right-handed 310
Helix 95	AK5	E	338	356	Right-handed alpha
Helix 96	AK6	F	6	10	Right-handed 310
Helix 97	AK7	F	31	42	Right-handed alpha
Helix 98	AK8	F	57	69	Right-handed alpha
Helix 99	AK9	F	71	77	Right-handed alpha
Helix 100	AL1	F	77	82	Right-handed alpha
Helix 101	AL2	F	101	112	Right-handed alpha
Helix 102	AL3	F	126	141	Right-handed alpha
Helix 103	AL4	F	145	156	Right-handed alpha
Helix 104	AL5	F	169	178	Right-handed alpha
Helix 105	AL6	F	179	189	Right-handed alpha
Helix 106	AL7	F	202	210	Right-handed alpha
Helix 107	AL8	F	212	224	Right-handed alpha
Helix 108	AL9	F	224	236	Right-handed alpha
Helix 109	AM1	F	260	273	Right-handed alpha
Helix 110	AM2	F	274	300	Right-handed alpha
Helix 111	AM3	F	324	334	Right-handed alpha
Helix 112	AM4	F	335	337	Right-handed 310
Helix 113	AM5	F	338	358	Right-handed alpha
Helix 114	AM6	I	529	542	Right-handed alpha
Helix 115	AM7	J	529	541	Right-handed alpha
Helix 116	AM8	K	529	542	Right-handed alpha
Helix 117	AM9	L	529	542	Right-handed alpha
Helix 118	AN1	M	529	542	Right-handed alpha
Helix 119	AN2	N	529	542	Right-handed alpha

There are 6 sheets in PDB entry 6JMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	21	23	anti-parallel
Strand 3	A	48	50	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	21	23	anti-parallel
Strand 3	D	48	50	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	21	23	anti-parallel
Strand 3	B	48	50	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	21	23	anti-parallel
Strand 3	C	48	50	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	30	first strand
Strand 2	E	21	23	anti-parallel
Strand 3	E	48	50	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	30	first strand
Strand 2	F	21	23	anti-parallel
Strand 3	F	48	50	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMT