Analysis of interatomic Contacts of Structural Units in PDB entry:
6JMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JMW entry

There are 2 chains in PDB entry 6JMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLY 456
B
 THR 1GLY 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6JMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
16 21Right-handed 310
Helix 3
AA3
A
24 37Right-handed alpha
Helix 4
AA4
A
54 62Right-handed alpha
Helix 5
AA5
A
72 83Right-handed alpha
Helix 6
AA6
A
85 89Right-handed 310
Helix 7
AA7
A
93 104Right-handed alpha
Helix 8
AA8
A
105 107Right-handed 310
Helix 9
AA9
A
111 132Right-handed alpha
Helix 10
AB1
A
141 159Right-handed alpha
Helix 11
AB2
A
163 167Right-handed 310
Helix 12
AB3
A
171 187Right-handed alpha
Helix 13
AB4
A
188 190Right-handed 310
Helix 14
AB5
A
195 197Right-handed 310
Helix 15
AB6
A
198 227Right-handed alpha
Helix 16
AB7
A
232 240Right-handed alpha
Helix 17
AB8
A
250 265Right-handed alpha
Helix 18
AB9
A
266 283Right-handed alpha
Helix 19
AC1
A
283 298Right-handed alpha
Helix 20
AC2
A
304 311Right-handed alpha
Helix 21
AC3
A
311 325Right-handed alpha
Helix 22
AC4
A
357 361Right-handed alpha
Helix 23
AC5
A
363 368Right-handed alpha
Helix 24
AC6
A
375 380Right-handed 310
Helix 25
AC7
A
381 385Right-handed 310
Helix 26
AC8
A
395 399Right-handed 310
Helix 27
AC9
A
402 420Right-handed alpha
Helix 28
AD1
B
11 15Right-handed 310
Helix 29
AD2
B
16 21Right-handed 310
Helix 30
AD3
B
24 37Right-handed alpha
Helix 31
AD4
B
54 62Right-handed alpha
Helix 32
AD5
B
72 83Right-handed alpha
Helix 33
AD6
B
85 89Right-handed 310
Helix 34
AD7
B
93 104Right-handed alpha
Helix 35
AD8
B
105 108Right-handed 310
Helix 36
AD9
B
109 110Right-handed 310
Helix 37
AE1
B
111 132Right-handed alpha
Helix 38
AE2
B
141 159Right-handed alpha
Helix 39
AE3
B
163 167Right-handed 310
Helix 40
AE4
B
171 187Right-handed alpha
Helix 41
AE5
B
188 190Right-handed 310
Helix 42
AE6
B
195 197Right-handed 310
Helix 43
AE7
B
198 227Right-handed alpha
Helix 44
AE8
B
232 240Right-handed alpha
Helix 45
AE9
B
250 265Right-handed alpha
Helix 46
AF1
B
266 283Right-handed alpha
Helix 47
AF2
B
283 298Right-handed alpha
Helix 48
AF3
B
304 310Right-handed alpha
Helix 49
AF4
B
311 325Right-handed alpha
Helix 50
AF5
B
357 361Right-handed alpha
Helix 51
AF6
B
363 368Right-handed alpha
Helix 52
AF7
B
375 380Right-handed 310
Helix 53
AF8
B
381 385Right-handed 310
Helix 54
AF9
B
395 399Right-handed 310
Helix 55
AG1
B
402 420Right-handed alpha
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There are 8 sheets in PDB entry 6JMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
352 356parallel
Strand 4
A
330 335anti-parallel
Strand 5
A
67 70anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
445 450anti-parallel
Strand 3
A
421 424anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
345 347anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
439 441anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
352 356parallel
Strand 4
B
330 335anti-parallel
Strand 5
B
67 69anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
445 450anti-parallel
Strand 3
B
421 424anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
345 347anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 435first strand
Strand 2
B
439 441anti-parallel
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