Analysis of interatomic Contacts of Structural Units in PDB entry:
6JN7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JN7 entry

There are 3 chains in PDB entry 6JN7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 20	HIS 281
B	MET 20	HIS 281
C	MET 20	HIS 281

There are 12 helices in PDB entry 6JN7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	109	Right-handed alpha
Helix 2	AA2	A	111	113	Right-handed 310
Helix 3	AA3	A	114	130	Right-handed alpha
Helix 4	AA4	A	260	273	Right-handed alpha
Helix 5	AA5	B	104	108	Right-handed 310
Helix 6	AA6	B	111	113	Right-handed 310
Helix 7	AA7	B	114	130	Right-handed alpha
Helix 8	AA8	B	260	273	Right-handed alpha
Helix 9	AA9	C	104	109	Right-handed alpha
Helix 10	AB1	C	111	113	Right-handed 310
Helix 11	AB2	C	114	130	Right-handed alpha
Helix 12	AB3	C	260	273	Right-handed alpha

There are 17 sheets in PDB entry 6JN7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	84	92	parallel
Strand 3	A	73	80	anti-parallel
Strand 4	A	37	41	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	33	first strand
Strand 2	A	58	64	anti-parallel
Strand 3	A	50	51	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	157	160	parallel
Strand 3	A	164	167	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	171	174	anti-parallel
Strand 3	A	247	254	anti-parallel
Strand 4	A	211	217	anti-parallel
Strand 5	A	199	205	anti-parallel
Strand 6	A	187	195	anti-parallel
Strand 7	A	227	228	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	171	174	anti-parallel
Strand 3	A	247	254	anti-parallel
Strand 4	A	257	259	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	A	233	236	anti-parallel
Strand 3	A	219	220	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	84	92	parallel
Strand 3	B	73	80	anti-parallel
Strand 4	B	37	42	anti-parallel
Strand 5	B	45	46	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	33	first strand
Strand 2	B	58	64	anti-parallel
Strand 3	B	50	51	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	157	160	parallel
Strand 3	B	164	167	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	171	174	anti-parallel
Strand 3	B	247	254	anti-parallel
Strand 4	B	211	217	anti-parallel
Strand 5	B	199	205	anti-parallel
Strand 6	B	187	195	anti-parallel
Strand 7	B	227	228	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	171	174	anti-parallel
Strand 3	B	247	254	anti-parallel
Strand 4	B	257	259	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	233	236	anti-parallel
Strand 3	B	219	220	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	84	92	parallel
Strand 3	C	73	80	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	45	46	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	33	first strand
Strand 2	C	58	64	anti-parallel
Strand 3	C	50	51	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	157	160	parallel
Strand 3	C	164	167	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	171	174	anti-parallel
Strand 3	C	247	254	anti-parallel
Strand 4	C	211	220	anti-parallel
Strand 5	C	199	205	anti-parallel
Strand 6	C	187	195	anti-parallel
Strand 7	C	227	228	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	182	first strand
Strand 2	C	233	237	anti-parallel
Strand 3	C	211	220	anti-parallel
Strand 4	C	247	254	anti-parallel
Strand 5	C	257	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JN7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JN7