Analysis of interatomic Contacts of Structural Units in PDB entry:
6JNA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JNA entry

There is 1 chain in PDB entry 6JNA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6JNA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
24 29Right-handed alpha
Helix 3
AA3
A
79 97Right-handed alpha
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
116 131Right-handed alpha
Helix 6
AA6
A
132 135Right-handed 310
Helix 7
AA7
A
149 165Right-handed alpha
Helix 8
AA8
A
169 173Right-handed 310
Helix 9
AA9
A
178 182Right-handed 310
Helix 10
AB1
A
189 207Right-handed alpha
Helix 11
AB2
A
221 234Right-handed alpha
Helix 12
AB3
A
256 267Right-handed alpha
Helix 13
AB4
A
281 285Right-handed 310
Helix 14
AB5
A
339 344Right-handed alpha
Helix 15
AB6
A
345 361Right-handed alpha
Helix 16
AB7
A
365 392Right-handed alpha
Helix 17
AB8
A
394 414Right-handed alpha
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There are 2 sheets in PDB entry 6JNA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 45first strand
Strand 2
A
51 60anti-parallel
Strand 3
A
102 108anti-parallel
Strand 4
A
68 74parallel
Strand 5
A
140 144parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
214 218parallel
Strand 4
A
291 294parallel
Strand 5
A
313 314parallel
Strand 6
A
336 337parallel
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